Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_N22
         (847 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.    230   5e-62
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    27   0.72 

>L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.
          Length = 229

 Score =  230 bits (562), Expect = 5e-62
 Identities = 115/130 (88%), Positives = 117/130 (90%)
 Frame = +2

Query: 368 KQRFRTKREFLRXQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTG 547
           K + + K      QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTG
Sbjct: 27  KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTG 86

Query: 548 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGXQLEDGRTLSDYXIQKESTLHLV 727
           KTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAG QLEDGRTLSDY IQKESTLHLV
Sbjct: 87  KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146

Query: 728 LRLXGGMQIF 757
           LRL GGMQIF
Sbjct: 147 LRLRGGMQIF 156



 Score =  222 bits (542), Expect = 1e-59
 Identities = 111/126 (88%), Positives = 113/126 (89%)
 Frame = +2

Query: 368 KQRFRTKREFLRXQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTG 547
           K + + K      QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTG
Sbjct: 103 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTG 162

Query: 548 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGXQLEDGRTLSDYXIQKESTLHLV 727
           KTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAG QLEDGRTLSDY IQKESTLHLV
Sbjct: 163 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222

Query: 728 LRLXGG 745
           LRL GG
Sbjct: 223 LRLRGG 228



 Score =  155 bits (375), Expect = 2e-39
 Identities = 78/98 (79%), Positives = 81/98 (82%)
 Frame = +1

Query: 139 KPKFRTKREFLRXQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTG 318
           K K + K      QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTG
Sbjct: 27  KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTG 86

Query: 319 KTITLEVEASDTIENVKAKIQDKEGIPPXSAAVDLCGQ 432
           KTITLEVE SDTIENVKAKIQDKEGIPP    +   G+
Sbjct: 87  KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 124



 Score =  155 bits (375), Expect = 2e-39
 Identities = 78/98 (79%), Positives = 81/98 (82%)
 Frame = +1

Query: 139 KPKFRTKREFLRXQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTG 318
           K K + K      QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTG
Sbjct: 103 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTG 162

Query: 319 KTITLEVEASDTIENVKAKIQDKEGIPPXSAAVDLCGQ 432
           KTITLEVE SDTIENVKAKIQDKEGIPP    +   G+
Sbjct: 163 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 200



 Score =  154 bits (374), Expect = 3e-39
 Identities = 76/80 (95%), Positives = 76/80 (95%)
 Frame = +2

Query: 518 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGXQLEDGRTLSDYX 697
           MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAG QLEDGRTLSDY 
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 698 IQKESTLHLVLRLXGGMQIF 757
           IQKESTLHLVLRL GGMQIF
Sbjct: 61  IQKESTLHLVLRLRGGMQIF 80



 Score = 86.2 bits (204), Expect = 1e-18
 Identities = 42/52 (80%), Positives = 43/52 (82%)
 Frame = +3

Query: 48  LRGGMQIFVKTLTGXTITLEVEASDTIENVKAKIQDKEGIPPXSAAIDLCGK 203
           LRGGMQIFVKTLTG TITLEVE SDTIENVKAKIQDKEGIPP    +   GK
Sbjct: 73  LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 124



 Score = 86.2 bits (204), Expect = 1e-18
 Identities = 42/52 (80%), Positives = 43/52 (82%)
 Frame = +3

Query: 48  LRGGMQIFVKTLTGXTITLEVEASDTIENVKAKIQDKEGIPPXSAAIDLCGK 203
           LRGGMQIFVKTLTG TITLEVE SDTIENVKAKIQDKEGIPP    +   GK
Sbjct: 149 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 200



 Score = 81.0 bits (191), Expect = 4e-17
 Identities = 40/50 (80%), Positives = 41/50 (82%)
 Frame = +1

Query: 139 KPKFRTKREFLRXQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 288
           K K + K      QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 179 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228



 Score = 78.2 bits (184), Expect = 3e-16
 Identities = 38/48 (79%), Positives = 40/48 (83%)
 Frame = +1

Query: 289 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPXSAAVDLCGQ 432
           MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPP    +   G+
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48



 Score = 77.8 bits (183), Expect = 4e-16
 Identities = 38/48 (79%), Positives = 39/48 (81%)
 Frame = +3

Query: 60  MQIFVKTLTGXTITLEVEASDTIENVKAKIQDKEGIPPXSAAIDLCGK 203
           MQIFVKTLTG TITLEVE SDTIENVKAKIQDKEGIPP    +   GK
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48



 Score = 24.6 bits (51), Expect = 3.8
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +1

Query: 763 KHLLXKTITLEVEASD 810
           K L  KTITLEVE SD
Sbjct: 6   KTLTGKTITLEVEPSD 21



 Score = 24.6 bits (51), Expect = 3.8
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +1

Query: 763 KHLLXKTITLEVEASD 810
           K L  KTITLEVE SD
Sbjct: 82  KTLTGKTITLEVEPSD 97



 Score = 24.6 bits (51), Expect = 3.8
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +1

Query: 763 KHLLXKTITLEVEASD 810
           K L  KTITLEVE SD
Sbjct: 158 KTLTGKTITLEVEPSD 173


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 27.1 bits (57), Expect = 0.72
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 157 KREFLRXQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 279
           KREF   Q R IF G+ +++   +    +Q++   HL++ L
Sbjct: 588 KREFPDLQNRTIFTGRFVKELYDVRSGCVQEQDGTHLLMNL 628



 Score = 27.1 bits (57), Expect = 0.72
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 386 KREFLRXQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 508
           KREF   Q R IF G+ +++   +    +Q++   HL++ L
Sbjct: 588 KREFPDLQNRTIFTGRFVKELYDVRSGCVQEQDGTHLLMNL 628


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 791,443
Number of Sequences: 2352
Number of extensions: 14355
Number of successful extensions: 27
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 89718867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)