Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_N20
         (867 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    24   2.1  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    24   2.1  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    24   2.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.6  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   6.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   6.4  

>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 643 NSNQVNYKRFYCN 605
           N N  NYK+ YCN
Sbjct: 90  NYNNNNYKKLYCN 102


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 643 NSNQVNYKRFYCN 605
           N N  NYK+ YCN
Sbjct: 90  NYNNNNYKKLYCN 102


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 643 NSNQVNYKRFYCN 605
           N N  NYK+ YCN
Sbjct: 90  NYNNNNYKKLYCN 102


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
 Frame = +3

Query: 666 LVLS*FYICYMSMFYCN--DLFC 728
           +VL  F IC++  F CN  D  C
Sbjct: 623 IVLGVFLICWLPFFTCNIMDAIC 645


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 510 FLKSGTIVIHDRIH 551
           F++SG +VIH R H
Sbjct: 185 FIQSGQLVIHMRTH 198


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = -2

Query: 410 FINKNVLRRVLNKLNPFLFISH*WCNLKLSTSDFKYIFIYNYSSPFTAIKAPCNEHSQN 234
           F +KN+    L  + P+   +  W  L    +  K IFI++  +   A+       SQN
Sbjct: 135 FSDKNIHVSFLRTVPPYSHQTDVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQN 193


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,731
Number of Sequences: 438
Number of extensions: 3888
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)