Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_N19
         (878 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1330 - 29375494-29376912                                         35   0.099
08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165     33   0.30 
04_01_0015 - 235068-235231,238714-239701                               29   4.9  
01_01_0325 + 2631637-2631882,2632715-2632788,2632874-2633006,263...    29   6.5  
11_06_0012 + 19251085-19251666                                         28   8.6  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.6  
06_01_0817 - 6185881-6187074                                           28   8.6  
04_04_1105 - 30942735-30942791,30943116-30943466,30943670-309437...    28   8.6  

>06_03_1330 - 29375494-29376912
          Length = 472

 Score = 34.7 bits (76), Expect = 0.099
 Identities = 26/71 (36%), Positives = 32/71 (45%)
 Frame = +1

Query: 601 RQDYKDTRRFPLESSLVRSPVPDPCRLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAPS 780
           R  + D  R  LES L R PVPD  R P  C       AW+   A A   + R R+  P 
Sbjct: 13  RPGWADLPRDLLESVLGRLPVPDRLRFPGVC------TAWQ--SADAASATARFRAAQPP 64

Query: 781 WAVCTNPPFSP 813
           W +    PF+P
Sbjct: 65  WLML---PFNP 72


>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
          Length = 430

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = -1

Query: 647 RELSRGKRLVSL*SCRISPPXT*ASIFVMLVQGGGAYGKTPAT 519
           R LSRGK L+S  + R  PP   + + V+ + GGG  G  P T
Sbjct: 22  RVLSRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGT 64


>04_01_0015 - 235068-235231,238714-239701
          Length = 383

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +1

Query: 643 SLVRSPVPDPCRLPDTCPPFSL 708
           SL   PV DPCR  DTC PF++
Sbjct: 299 SLYTQPV-DPCRSYDTCGPFTI 319


>01_01_0325 +
           2631637-2631882,2632715-2632788,2632874-2633006,
           2633091-2633172,2633471-2633580,2633659-2633751,
           2633854-2633904,2634013-2634105,2635257-2636129,
           2636204-2636316,2636436-2636448
          Length = 626

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = -1

Query: 716 ASRREK---GGQVSGKRQGSGTGERTRELSRGKR 624
           A RR K   G  VSG R G G G R R   RG+R
Sbjct: 40  AKRRRKDAMGSSVSGSRSGGGGGRRLRH-GRGRR 72


>11_06_0012 + 19251085-19251666
          Length = 193

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 728 RKRHASRREKGGQVSGKRQGSGTGE 654
           R+RH  RR+ GG   G+    G G+
Sbjct: 83  RRRHGGRRDSGGGAGGRGSRGGVGD 107


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +2

Query: 302 NESAN---ARGEAVCVLGALPLPRSLTRCAR 385
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>06_01_0817 - 6185881-6187074
          Length = 397

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 640 SSLVRSPVPDPCRLPDTCPPFSLR 711
           +++V SPVP P  +P   PPF+ +
Sbjct: 72  AAIVLSPVPQPLPVPPASPPFAFQ 95


>04_04_1105 -
           30942735-30942791,30943116-30943466,30943670-30943762,
           30943869-30944072,30944155-30944399,30945019-30945877,
           30946070-30946936,30947113-30947562
          Length = 1041

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = +1

Query: 655 SPVPDPCRLPDTCPPFSLREAWRFLIA-----HAVGISVRCRS 768
           S + +  RL D C P  L+E WRFL+A      A   S RC++
Sbjct: 842 SHITEEERLAD-CDPRVLKEQWRFLVAFWNTEEAQAASARCKA 883


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,945,943
Number of Sequences: 37544
Number of extensions: 470577
Number of successful extensions: 1537
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1536
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)