Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_N19
         (878 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC113467-1|AAI13468.1| 1121|Homo sapiens WD repeat domain 6 prot...    31   4.2  
BC101707-1|AAI01708.1| 1121|Homo sapiens WD repeat domain 6 prot...    31   4.2  
AF099100-1|AAF80244.1| 1121|Homo sapiens WD-repeat protein 6 pro...    31   4.2  

>BC113467-1|AAI13468.1| 1121|Homo sapiens WD repeat domain 6
           protein.
          Length = 1121

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = +1

Query: 658 PVPDPCRLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFSPDRCALSGN 837
           P  D C L   C    + +AW+ L   A  +S +   + P+ A+  N P +PDR  +SG+
Sbjct: 153 PCTDRCTLSSAC---LIGDAWKELTIVAGAVSNQLLVWYPATALADNKPVAPDR-RISGH 208


>BC101707-1|AAI01708.1| 1121|Homo sapiens WD repeat domain 6 protein
           protein.
          Length = 1121

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = +1

Query: 658 PVPDPCRLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFSPDRCALSGN 837
           P  D C L   C    + +AW+ L   A  +S +   + P+ A+  N P +PDR  +SG+
Sbjct: 153 PCTDRCTLSSAC---LIGDAWKELTIVAGAVSNQLLVWYPATALADNKPVAPDR-RISGH 208


>AF099100-1|AAF80244.1| 1121|Homo sapiens WD-repeat protein 6
           protein.
          Length = 1121

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = +1

Query: 658 PVPDPCRLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFSPDRCALSGN 837
           P  D C L   C    + +AW+ L   A  +S +   + P+ A+  N P +PDR  +SG+
Sbjct: 153 PCTDRCTLSSAC---LIGDAWKELTIVAGAVSNQLLVWYPATALADNKPVAPDR-RISGH 208


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,698,123
Number of Sequences: 237096
Number of extensions: 2426465
Number of successful extensions: 12881
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12872
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11215125244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)