Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_N18
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   3.6  
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   3.6  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    27   4.7  
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    26   6.3  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    26   8.3  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    26   8.3  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    26   8.3  

>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/48 (27%), Positives = 29/48 (60%)
 Frame = -3

Query: 518  LPPPGRSSLAHSHFCFLGVCIFFSAALKKIELNHRLQNENLIRPMSHF 375
            LP  GR++  + + CFL + +   + LK+ E N   Q++ +I+ ++++
Sbjct: 1379 LPKNGRNAAMNMYSCFLDLFLLEVSDLKQTECN--AQSDKIIKSITYW 1424


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +2

Query: 194 DNNMKKVSSVVWRFFER-IEENKRCVSVVCKLCENQYKYFGNTTNLRVHLTNKHP 355
           DN+    S +     +R +E   +  S  C+ C +QY + G   N  V   +K+P
Sbjct: 557 DNSTDFASCLACAVVQRSLERRNQSTSAACQQCFSQYCWNGTVDNTPVDDDSKNP 611


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
 Frame = -1

Query: 358 YWMFISQMYSEICCITEV-----FV--LILTQFTHNRDAPLILFNTLKKSPH 224
           YW+ +S + +  CCI  +     FV  ++ TQ TH  DA  ++ +++  S H
Sbjct: 487 YWVTLSYLCTFTCCIMTIIRINYFVDNVVTTQTTHEEDA--LIGSSINTSSH 536


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +2

Query: 197 NNMKKVSSVVWRFFERIEENKRCVSVVCK-LCENQYKYFGNTTNLRVHLTNKHPIQ 361
           + +KK S  V   F     +   +++V K LCE   +Y     N+  HLTN +P++
Sbjct: 435 DTIKKQSRTVHITFVWSARSSALLNIVHKSLCE-AVRYTEMNINIFCHLTNSYPVE 489


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 179 YQSRID-NNMKKVSSVVWRFFERIEENKRCVSVVCKLCENQYKYFGN 316
           Y+S  D + + K++ ++   F  +EE  +C++ V K  E   KY GN
Sbjct: 80  YESTHDISELHKITPILASKFLELEEQNKCLNTVNKYMEVVKKY-GN 125


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/46 (23%), Positives = 24/46 (52%)
 Frame = -1

Query: 592 INEPVFIGLLATVHLFHQIYCSIVVFLLQVGVL*HIHIFASSGCVF 455
           IN+P +IG +A   LF  +    + + +++     + +F+  G +F
Sbjct: 535 INDPAYIGSMAFAFLFQSLIIGSIFYDMKLNT---VDVFSRGGVLF 577


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 26  LGNSLRFDLLSMRARFSPFC*LKFNSHCFLLDT 124
           LG+++ FD+LS++  F     +  +  CF+ DT
Sbjct: 401 LGSTVVFDILSLQPTFVKEITIDDDESCFIFDT 433


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,402,234
Number of Sequences: 5004
Number of extensions: 70267
Number of successful extensions: 224
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)