Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_N18
         (892 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0104 + 796572-796644,796780-796820,797603-797722                 31   1.2  
03_02_0870 + 11964135-11964224,11965013-11965175,11965262-119653...    30   2.8  
10_03_0043 - 7327303-7327419,7327815-7327901                           28   8.7  
07_03_0460 + 18425464-18427473                                         28   8.7  

>07_01_0104 + 796572-796644,796780-796820,797603-797722
          Length = 77

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 242 RIEENKRCVSVVCKLCENQYKYFGNTTNLRVHLTNKHP 355
           ++E NK+ +++ CK+C   +    + T  + H   KHP
Sbjct: 27  QLEANKKAMNIQCKICMQTFICTTSETKCKEHAEAKHP 64


>03_02_0870 + 11964135-11964224,11965013-11965175,11965262-11965380,
            11965971-11966083,11966179-11966234,11966320-11966417,
            11966588-11966725,11966820-11967125,11967208-11967471,
            11967587-11967754,11967838-11968056,11968115-11968158,
            11968761-11968830,11968949-11969110,11969672-11969779,
            11969873-11969910,11970121-11970265,11970800-11970926,
            11971037-11971230,11971529-11971659,11972014-11972089,
            11972218-11972328,11972465-11972647,11973264-11973407,
            11973946-11973969,11974555-11974728,11974808-11975155,
            11975232-11975561,11975776-11975961,11976052-11977026,
            11977145-11977399
          Length = 1852

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +2

Query: 194  DNNMKKVSSVVWRF--FERIEENKRCVSVVCKLCENQYKYFGNTTNLRVHLT 343
            D  +K+++  + R   F      KR V  +  L  N + YF NTT LRV LT
Sbjct: 1237 DRFLKQIAFHLLRLAVFRNDSIRKRAVVGLQILVRNSFNYFKNTTRLRVMLT 1288


>10_03_0043 - 7327303-7327419,7327815-7327901
          Length = 67

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 225 CGDFLSVLKRIRGASRLCVNCVRISTNTSVIQQISEYI*LINI 353
           CGD     K + G   L + CV++ TN  V+  ++ Y+  +NI
Sbjct: 5   CGD----AKHLNGIFTLLLPCVQLMTNIQVLTALNWYLTAVNI 43


>07_03_0460 + 18425464-18427473
          Length = 669

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = -3

Query: 599 MDHQRASLHRIVGYRASVSPNLL*HRCLPPPGRSSLAHSHFCFLGVCIFFSAALKKIELN 420
           +DH  +SL +I GY  S  P++         G     H  + F G+ +      KK+ L 
Sbjct: 531 LDHVSSSLVKIAGYGTSGLPDIDKALDSLETGHGKKEHDVYSF-GLVLLTLFTWKKVSLP 589

Query: 419 HRLQNE 402
           H L++E
Sbjct: 590 HDLKSE 595


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,750,817
Number of Sequences: 37544
Number of extensions: 404521
Number of successful extensions: 916
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)