Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_N18
         (892 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50742-1|CAA90614.2|  605|Caenorhabditis elegans Hypothetical pr...    33   0.36 
Z93380-5|CAB07601.1|  240|Caenorhabditis elegans Hypothetical pr...    29   5.9  
U49831-5|AAA93406.1|   97|Caenorhabditis elegans Hypothetical pr...    29   5.9  
Z92813-7|CAB07283.2|  758|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z82282-8|CAB05278.1|  575|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z50742-1|CAA90614.2|  605|Caenorhabditis elegans Hypothetical
           protein K09A11.1 protein.
          Length = 605

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
 Frame = +2

Query: 212 VSSVVWRFFERIEENKRCVSVVCKLCENQYKYFGNTTNLRVHLTNKHPIQWELTQNGTL- 388
           V S VW +F ++++ +   ++  K+     +  G+T NL  HLT  HP ++ L +   + 
Sbjct: 2   VKSRVWDYFLKLQDGRNKCNLCNKILARGSR--GSTHNLISHLTRVHPKEYVLQEEPPVM 59

Query: 389 ----DESNFRFEDGDSIQSSSTPQ 448
               D S F F+  +      T Q
Sbjct: 60  IAQEDSSEFSFQSNNMKTEDFTMQ 83


>Z93380-5|CAB07601.1|  240|Caenorhabditis elegans Hypothetical
           protein F28C12.6 protein.
          Length = 240

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 449 SAALKKIELNHRLQNENLIRPMSHFVLI 366
           S  +K++++NHR Q + +I+P   F +I
Sbjct: 172 SVEMKQVQINHRRQTQRIIKPKHIFRII 199


>U49831-5|AAA93406.1|   97|Caenorhabditis elegans Hypothetical
           protein F10C1.3 protein.
          Length = 97

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 213 YHLLCGDFLSVLKRIRGASRLCVNCVRISTNTSVI 317
           Y+L   DF  VL RI      C+ C+ IS ++ +I
Sbjct: 3   YNLAVFDFSMVLNRIHALLVTCIQCLTISEHSGLI 37


>Z92813-7|CAB07283.2|  758|Caenorhabditis elegans Hypothetical
           protein T28A8.7 protein.
          Length = 758

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 393 NQIFVLKTVIQFNLLQRRRKENTHPEEAKM 482
           N   +  T + +NL  RR K  TH EEAKM
Sbjct: 142 NGTCITATDLFYNLPTRRNKMTTHGEEAKM 171


>Z82282-8|CAB05278.1|  575|Caenorhabditis elegans Hypothetical
           protein T07G12.11 protein.
          Length = 575

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +2

Query: 317 TTNLRVHLTNKHPIQWELTQNGTLDESNFRFEDGDSI 427
           T ++  H+ + HP+    T++ T+ E  + F+D D++
Sbjct: 342 TVSIGNHIVDHHPVIELSTEHNTMGEFQYDFDDEDTV 378


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,988,215
Number of Sequences: 27780
Number of extensions: 402122
Number of successful extensions: 1223
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1223
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)