Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_N17
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein Smf1|Schizosac...   111   2e-25
SPAC2F3.17c |lsm6||U6 snRNP-associated protein Lsm6|Schizosaccha...    77   4e-15
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch...    48   2e-06
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    30   0.38 
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha...    27   2.7  
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S...    26   8.2  
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar...    26   8.2  

>SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein
           Smf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 78

 Score =  111 bits (266), Expect = 2e-25
 Identities = 50/68 (73%), Positives = 55/68 (80%)
 Frame = +1

Query: 160 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLI 339
           +NPKPFL  L GK VLV+LKWG EYKG L S D YMNLQL N EELVDG  TG+LGE+LI
Sbjct: 6   VNPKPFLQGLIGKPVLVRLKWGQEYKGTLQSVDSYMNLQLLNAEELVDGVKTGDLGEILI 65

Query: 340 RCNNVLYV 363
           RCNNVL+V
Sbjct: 66  RCNNVLWV 73


>SPAC2F3.17c |lsm6||U6 snRNP-associated protein
           Lsm6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 75

 Score = 76.6 bits (180), Expect = 4e-15
 Identities = 37/71 (52%), Positives = 45/71 (63%)
 Frame = +1

Query: 163 NPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIR 342
           +P  FLN + GK VL++L  G +YKG+L   DGYMNL L  TEE V+G  T   G+  IR
Sbjct: 4   SPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIR 63

Query: 343 CNNVLYVRGAD 375
            NNVLYV   D
Sbjct: 64  GNNVLYVSALD 74


>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
           Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +1

Query: 166 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANT-EELVDGTCTGNLGEVLIR 342
           P   LN+  G+ +LV+LK G  + G L + D YMNL L      + DG     L E  IR
Sbjct: 3   PLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIR 62

Query: 343 CNNVLYVRGAD 375
            NN+ Y+R  D
Sbjct: 63  GNNIKYLRIQD 73


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +1

Query: 184 SLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEE 294
           SL   S+ V  K G  + G L++ DG+MNL L++ +E
Sbjct: 8   SLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQE 44


>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
           Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 93

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 202 VLVKLKWGHEYKGLLVSTDGYMNLQLANTEELV 300
           V VKL+   E  G L + D ++N+ L + EE+V
Sbjct: 22  VYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIV 54


>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +3

Query: 12  LPXALLGNSLRFWD-EISVELEAKPIHFEVIFCISC*PILKTCKNGG 149
           L  A    + R WD    VEL  +  H E IF I+C P      +GG
Sbjct: 280 LVSASFDTTWRLWDVHTGVELLMQEGHSEGIFSIACQPDGSLVSSGG 326


>SPCC285.12 |lsm7||U6 snRNP-associated protein
           Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 113

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
 Frame = +1

Query: 223 GHEYKGLLVSTDGYMNLQLANTEELV----DGTCTG---NLGEVLIRCNNVLYVRGAD 375
           G +  G+L   D  MNL L + EE +    DG  TG    LG V++R   ++ +   D
Sbjct: 43  GRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLVLIAPMD 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,554,544
Number of Sequences: 5004
Number of extensions: 43325
Number of successful extensions: 90
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)