Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_N16
(845 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 32 0.089
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei... 28 1.4
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 28 1.4
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 28 1.9
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 27 2.5
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe... 27 3.3
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ... 27 3.3
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi... 27 3.3
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 27 3.3
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce... 27 4.4
SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 5.8
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 26 5.8
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 26 5.8
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 26 7.7
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 26 7.7
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 32.3 bits (70), Expect = 0.089
Identities = 20/65 (30%), Positives = 36/65 (55%)
Frame = +3
Query: 279 KDALLNKLTSSFASRTKEITWMKITKEFNKLNPRHIRTMESIKMKWENLKRDVRKLSNNL 458
KDA L+KLT + EI M++T + K+N + I+ S+ + +K+ R+ S +
Sbjct: 990 KDAELDKLTKYISDYKTEIQEMRLTNQ--KMNEKSIQQEGSLSESLKRVKKLERENSTLI 1047
Query: 459 LDINI 473
D++I
Sbjct: 1048 SDVSI 1052
>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 28.3 bits (60), Expect = 1.4
Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 10/108 (9%)
Frame = +3
Query: 351 TKEFNKLNPRHIRTMESIKMKWENLKR-----DVRK--LSNNLLDINIDQLDEVKSRVVS 509
TKE NK+ P++ + K ++L + DV SN+ +NI+ +K + +
Sbjct: 181 TKEMNKIKPKNDSESDRFKRNSQSLSQQSPLLDVHSPDNSNHRTMLNINNSSPIKPKKIF 240
Query: 510 MMCEADNR-TEAAKLNIDL--KLNDFEEQDEIVTNVAENETSATHEEI 644
E NR + K DL + + F++ + + EN++S T + +
Sbjct: 241 KPNEVKNRISRLQKTFADLENQHHSFQQICQTLRKRLENDSSTTKQRL 288
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 28.3 bits (60), Expect = 1.4
Identities = 31/136 (22%), Positives = 62/136 (45%), Gaps = 7/136 (5%)
Frame = +3
Query: 255 ILNLIEKYKDALLNKLTSSFASRTKEITWMKITKEFNK------LNPRHIRTMESIK-MK 413
+L +E ++ALL + +SF++R + + FN L ++R ++ +K
Sbjct: 758 VLGSLEDRRNALLRVIFNSFSARIRGFLTRRRLYRFNHRQDAAILLQHNLRQLKLLKPHP 817
Query: 414 WENLKRDVRKLSNNLLDINIDQLDEVKSRVVSMMCEADNRTEAAKLNIDLKLNDFEEQDE 593
W NL ++ L + Q DE R +++ N+ E+ K + +L +E+
Sbjct: 818 WWNLFLHLKPL------LGTTQTDEYLRRKDALINNLQNQLESTK-EVANELTITKERVL 870
Query: 594 IVTNVAENETSATHEE 641
+TN + E + HE+
Sbjct: 871 QLTNDLQEEQALAHEK 886
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 27.9 bits (59), Expect = 1.9
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = -1
Query: 395 HGSYMAWVQFIELFRYFHPGN--FFGTACKRASQFIK*GIFVFLN*IQY*HNFFFGKG 228
HG Y ++ E+ + N F G R Q ++ + +FL I+Y NFF +G
Sbjct: 250 HGQYSDLIRLFEMCGFPPSSNYLFLGDYVDRGKQSLETILLLFLYKIRYPENFFLLRG 307
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 27.5 bits (58), Expect = 2.5
Identities = 15/63 (23%), Positives = 30/63 (47%)
Frame = +3
Query: 243 EVMLILNLIEKYKDALLNKLTSSFASRTKEITWMKITKEFNKLNPRHIRTMESIKMKWEN 422
EV+L ++ I +L SF E++W +IT + PR + +++ + N
Sbjct: 1145 EVVLSIDRIFTQTSSLSGSAIVSFFKALCEVSWDEITSSSDLEQPRLYSLQKLVEISYYN 1204
Query: 423 LKR 431
++R
Sbjct: 1205 MQR 1207
>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 537
Score = 27.1 bits (57), Expect = 3.3
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 437 YISLKVFPLHFNTFHGSYMAWVQFIELFRYFHPGNFFG 324
Y S K+F L +N S W+ FI + F P +F G
Sbjct: 401 YWSPKMFGLMYNETLASIQFWILFIGVNIVFGPQHFLG 438
>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 426
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -2
Query: 106 SSPTQYTSGEARITL*GSNTFXT*GFP 26
S+PT+ +SGE+R+ G+N F GFP
Sbjct: 230 SAPTKISSGESRVYSKGTNYFCL-GFP 255
>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 680
Score = 27.1 bits (57), Expect = 3.3
Identities = 25/103 (24%), Positives = 40/103 (38%)
Frame = +3
Query: 180 DENLDETVFLTRFRSPSFTKEEVMLILNLIEKYKDALLNKLTSSFASRTKEITWMKITKE 359
D N D ++L F E++ + KY D L S+FA+ + E
Sbjct: 100 DNNTDAMLYLANIEF--FGLFEIIPEIEDSVKYYDMLQKANGSAFANNMMGFFYSTSFSE 157
Query: 360 FNKLNPRHIRTMESIKMKWENLKRDVRKLSNNLLDINIDQLDE 488
+ NP R + K +L +NL+ +N+ Q DE
Sbjct: 158 YASNNPALARIHWELAAKQGSLDAHQFLAYHNLIALNMPQSDE 200
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 27.1 bits (57), Expect = 3.3
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Frame = +3
Query: 171 IMDDENLDETVFLTRFRSPSFTKEEVMLILNLIEKY------KDALLNKLTSSFASRTKE 332
I ++N E FL R + + + L+E Y K+AL+ + F S
Sbjct: 506 IAQNKNPSELEFLEHARQYLANESKYNEFIKLLELYSQEVFDKNALVERCYVFFGSNEHL 565
Query: 333 ITWMKITKEFNKLNP 377
+ W+K ++N NP
Sbjct: 566 MNWLKDLVKYNPANP 580
>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 357
Score = 26.6 bits (56), Expect = 4.4
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +3
Query: 339 WMKITKEFNKLNPRHIRTMESIKMKWENLKRDVRKLSNNLLDINIDQLDEVKSRVVSMMC 518
W K T E+ K + + +I + +++RD+R +NL +D++D SR +M+
Sbjct: 214 WRKSTDEWRKSTDERLENLLNIVREILDVQRDMRNDLSNLTR-KVDRMDMRLSRNNNMIM 272
Query: 519 E--ADNRTEAAKLNIDL 563
A TE N D+
Sbjct: 273 RSFAQPITEVPFFNGDI 289
>SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 266
Score = 26.2 bits (55), Expect = 5.8
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 207 LTRFRSPSFTKEEVMLILNLIEKYKDALL 293
+T + FTKE ++N + +Y+DA+L
Sbjct: 90 ITYLENSEFTKENYAQMINSLYRYQDAIL 118
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 26.2 bits (55), Expect = 5.8
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +3
Query: 318 SRTKEITWMKITKEFNKLNPRHIRTMESIKMK--WENLKRDVRKLSNNLLDINIDQLDEV 491
S+T ++T K+ + K N + I+ +K+ E L+ +K ++D+N +DE
Sbjct: 878 SKTSDLT-DKVNRRQRK-NDKKIKNKIQVKLSSILEMLRSRYKKFKKPIIDLNDIYIDES 935
Query: 492 KSRVV 506
RVV
Sbjct: 936 NERVV 940
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 26.2 bits (55), Expect = 5.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 411 KWENLKRDVRKLSNNLLDINID 476
+WE+L + VR S+N ++N D
Sbjct: 1045 RWESLLKSVRGTSDNTAEVNFD 1066
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 25.8 bits (54), Expect = 7.7
Identities = 22/74 (29%), Positives = 33/74 (44%)
Frame = +3
Query: 411 KWENLKRDVRKLSNNLLDINIDQLDEVKSRVVSMMCEADNRTEAAKLNIDLKLNDFEEQD 590
K LKR R L +I ++ +E ++ V EA NRT+ + + + DF EQD
Sbjct: 124 KLRRLKRG-RDQEETLENIFSEEEEEEENEVDD---EAPNRTQGHRAGVIDEFADFIEQD 179
Query: 591 EIVTNVAENETSAT 632
E + E T
Sbjct: 180 EFEDEERQEEKYET 193
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 25.8 bits (54), Expect = 7.7
Identities = 12/67 (17%), Positives = 32/67 (47%)
Frame = +3
Query: 231 FTKEEVMLILNLIEKYKDALLNKLTSSFASRTKEITWMKITKEFNKLNPRHIRTMESIKM 410
++ EV++ ++++ L ++ F E++W +I NPR + +++
Sbjct: 1141 YSSREVVMAVDMLFSNTRNLGSEGIYDFVKALIEVSWEEIECSLELSNPRLFSLQKLVEI 1200
Query: 411 KWENLKR 431
+ N++R
Sbjct: 1201 SYYNMRR 1207
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,797,899
Number of Sequences: 5004
Number of extensions: 52991
Number of successful extensions: 171
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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