Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_N16
         (845 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022979-7|AAB69903.1|  295|Caenorhabditis elegans Serpentine re...    34   0.11 
U12762-1|AAA62207.1|  558|Caenorhabditis elegans prolyl 4-hydrox...    30   1.8  
Z81547-2|CAB04460.1|  209|Caenorhabditis elegans Hypothetical pr...    30   2.4  
Z81134-9|CAB03452.1|  559|Caenorhabditis elegans Hypothetical pr...    30   2.4  
AL031635-12|CAA21045.1|  559|Caenorhabditis elegans Hypothetical...    30   2.4  
AJ270999-1|CAB71298.1|  559|Caenorhabditis elegans prolyl 4-hydr...    30   2.4  
U42841-5|AAM97959.1|  657|Caenorhabditis elegans Gex interacting...    29   4.2  
U42841-4|AAK77640.1|  706|Caenorhabditis elegans Gex interacting...    29   4.2  
U42841-3|AAK77638.1|  663|Caenorhabditis elegans Gex interacting...    29   4.2  
U42841-1|AAM97958.1|  716|Caenorhabditis elegans Gex interacting...    29   4.2  
AF100306-3|AAC68923.2|  155|Caenorhabditis elegans Hypothetical ...    29   4.2  
Z75953-3|CAB00100.1|  611|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U42841-2|AAK77639.1|  603|Caenorhabditis elegans Gex interacting...    28   7.3  
M77697-1|AAA27896.3|  273|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AF166171-1|AAD49860.1|  611|Caenorhabditis elegans adducin-head-...    28   7.3  
U29097-10|AAA68414.1|  348|Caenorhabditis elegans Serpentine rec...    28   9.6  
L13200-3|AAA28192.1|  304|Caenorhabditis elegans C.elegans chrom...    28   9.6  

>AF022979-7|AAB69903.1|  295|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 53 protein.
          Length = 295

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 21/71 (29%), Positives = 42/71 (59%)
 Frame = -2

Query: 433 SLLRFSHFILILSMVLIWRGFSLLNSFVIFIQVISLVRLANELVSLLSKASLYFSIKFNI 254
           SL+ FSH   + +M+L W+    LNSFV++   I L+ + ++++S    +  Y  + F+ 
Sbjct: 212 SLIAFSH-TFVFTMLLAWQ---TLNSFVVYASFIELLMIVSDMISF---SMAYILLIFDG 264

Query: 253 SITSSLVKDGL 221
           ++  S++K+ L
Sbjct: 265 NV-RSVIKNNL 274


>U12762-1|AAA62207.1|  558|Caenorhabditis elegans prolyl
           4-hydroxylase alpha subunit protein.
          Length = 558

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
 Frame = +3

Query: 342 MKITKEFNKLNPRHIRTMESIKMKWENLKRD-VRK--LSNNLLDINIDQLDEVKSRVVSM 512
           +K+T+E  K+NP H R   ++K   + L+++ VR+  +  NL  I   + D V       
Sbjct: 224 LKLTEELYKMNPTHPRAKGNVKWYEDLLEQEGVRRSDMRKNLPPIQNRRPDSVLGNTERT 283

Query: 513 MCEADNRTEAAKLNIDLKL 569
           M EA  R E       L+L
Sbjct: 284 MYEALCRNEVPVSRRHLRL 302


>Z81547-2|CAB04460.1|  209|Caenorhabditis elegans Hypothetical
           protein F53F8.3 protein.
          Length = 209

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +3

Query: 303 TSSFASRTKEITWMKITKEFNKLNPRHIRTMESIKMKWENLKRDVRKLSNNLLDINID 476
           +S  A + K    ++  +E NK+  R     E +K + E LK+D  +LS   L +N +
Sbjct: 5   SSRHADQRKNGAQLRAEEEANKVKLRLTAENEKLKSEVEKLKKDHEELSRVTLKVNTE 62


>Z81134-9|CAB03452.1|  559|Caenorhabditis elegans Hypothetical
           protein Y47D3B.10 protein.
          Length = 559

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
 Frame = +3

Query: 342 MKITKEFNKLNPRHIRTMESIKMKWENLKRD-VRK--LSNNLLDINIDQLDEVKSRVVSM 512
           +K+T+E  K+NP H R   ++K   + L+++ VR+  +  NL  I   + D V       
Sbjct: 224 LKLTEELYKMNPTHPRAKGNVKWYEDLLEQEGVRRSDMRKNLPPIQNRRPDSVLGNTERT 283

Query: 513 MCEADNRTE 539
           M EA  R E
Sbjct: 284 MYEALCRNE 292


>AL031635-12|CAA21045.1|  559|Caenorhabditis elegans Hypothetical
           protein Y47D3B.10 protein.
          Length = 559

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
 Frame = +3

Query: 342 MKITKEFNKLNPRHIRTMESIKMKWENLKRD-VRK--LSNNLLDINIDQLDEVKSRVVSM 512
           +K+T+E  K+NP H R   ++K   + L+++ VR+  +  NL  I   + D V       
Sbjct: 224 LKLTEELYKMNPTHPRAKGNVKWYEDLLEQEGVRRSDMRKNLPPIQNRRPDSVLGNTERT 283

Query: 513 MCEADNRTE 539
           M EA  R E
Sbjct: 284 MYEALCRNE 292


>AJ270999-1|CAB71298.1|  559|Caenorhabditis elegans prolyl
           4-hydroxylase alpha subunit1 protein.
          Length = 559

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
 Frame = +3

Query: 342 MKITKEFNKLNPRHIRTMESIKMKWENLKRD-VRK--LSNNLLDINIDQLDEVKSRVVSM 512
           +K+T+E  K+NP H R   ++K   + L+++ VR+  +  NL  I   + D V       
Sbjct: 224 LKLTEELYKMNPTHPRAKGNVKWYEDLLEQEGVRRSDMRKNLPPIQNRRPDSVLGNTERT 283

Query: 513 MCEADNRTE 539
           M EA  R E
Sbjct: 284 MYEALCRNE 292


>U42841-5|AAM97959.1|  657|Caenorhabditis elegans Gex interacting
           protein protein16, isoform k protein.
          Length = 657

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
 Frame = +3

Query: 267 IEKYKDALLNKLTSSFASRTKEIT--WMKITKEFNKLNPRHIRTMESIKMKWENLKRDVR 440
           ++++++   ++L     ++  E    W K      K N   +R +E++K + E LKRD  
Sbjct: 151 VDRHREMEASRLREYLKAKENEANQPWNKPGWPGPKKNDESLRELETMKQRIETLKRDAN 210

Query: 441 KLSNNL-LDINIDQLDEVKSR 500
           K   N  LD    + +E++ R
Sbjct: 211 KGPVNAELDELSKRAEELRKR 231


>U42841-4|AAK77640.1|  706|Caenorhabditis elegans Gex interacting
           protein protein16, isoform c protein.
          Length = 706

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
 Frame = +3

Query: 267 IEKYKDALLNKLTSSFASRTKEIT--WMKITKEFNKLNPRHIRTMESIKMKWENLKRDVR 440
           ++++++   ++L     ++  E    W K      K N   +R +E++K + E LKRD  
Sbjct: 157 VDRHREMEASRLREYLKAKENEANQPWNKPGWPGPKKNDESLRELETMKQRIETLKRDAN 216

Query: 441 KLSNNL-LDINIDQLDEVKSR 500
           K   N  LD    + +E++ R
Sbjct: 217 KGPVNAELDELSKRAEELRKR 237


>U42841-3|AAK77638.1|  663|Caenorhabditis elegans Gex interacting
           protein protein16, isoform a protein.
          Length = 663

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
 Frame = +3

Query: 267 IEKYKDALLNKLTSSFASRTKEIT--WMKITKEFNKLNPRHIRTMESIKMKWENLKRDVR 440
           ++++++   ++L     ++  E    W K      K N   +R +E++K + E LKRD  
Sbjct: 157 VDRHREMEASRLREYLKAKENEANQPWNKPGWPGPKKNDESLRELETMKQRIETLKRDAN 216

Query: 441 KLSNNL-LDINIDQLDEVKSR 500
           K   N  LD    + +E++ R
Sbjct: 217 KGPVNAELDELSKRAEELRKR 237


>U42841-1|AAM97958.1|  716|Caenorhabditis elegans Gex interacting
           protein protein16, isoform j protein.
          Length = 716

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
 Frame = +3

Query: 267 IEKYKDALLNKLTSSFASRTKEIT--WMKITKEFNKLNPRHIRTMESIKMKWENLKRDVR 440
           ++++++   ++L     ++  E    W K      K N   +R +E++K + E LKRD  
Sbjct: 210 VDRHREMEASRLREYLKAKENEANQPWNKPGWPGPKKNDESLRELETMKQRIETLKRDAN 269

Query: 441 KLSNNL-LDINIDQLDEVKSR 500
           K   N  LD    + +E++ R
Sbjct: 270 KGPVNAELDELSKRAEELRKR 290


>AF100306-3|AAC68923.2|  155|Caenorhabditis elegans Hypothetical
           protein T24C4.4 protein.
          Length = 155

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
 Frame = -2

Query: 487 SSNWSMFMSNKLFDSFLTSLLRFSHFI----LILSMVLIWRGFSLLNSFVIFIQVISLVR 320
           +++W MF+S  LF   +   L  SH +       S+   + G SLL S ++ +Q ++ + 
Sbjct: 54  AASWMMFISFGLFFPVILIYLHASHKVYHHGCCHSIRHNFNGISLLCSLIVILQAVAFIL 113

Query: 319 LANELVSLLSKA--SLYFSIKFNISITSSLVKDG 224
           +A            S YF++   I  T ++   G
Sbjct: 114 MAANASDYYGSLGYSAYFALVSGILTTIAMSLSG 147


>Z75953-3|CAB00100.1|  611|Caenorhabditis elegans Hypothetical
           protein F57F5.4a protein.
          Length = 611

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +3

Query: 474 DQLDEVKSRVVSMMCEADNRTEAAKLNIDLKLNDFEEQDEIVTN 605
           +QL+E+ S VV      + R E+ +L  D+K+  FEE  EI  N
Sbjct: 247 NQLNEINSFVVPKF---EGRQESEQLFRDVKVEQFEESAEISIN 287


>U42841-2|AAK77639.1|  603|Caenorhabditis elegans Gex interacting
           protein protein16, isoform b protein.
          Length = 603

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +3

Query: 267 IEKYKDALLNKLTSSFASRTKEIT--WMKITKEFNKLNPRHIRTMESIKMKWENLKRDVR 440
           ++++++   ++L     ++  E    W K      K N   +R +E++K + E LKRD  
Sbjct: 157 VDRHREMEASRLREYLKAKENEANQPWNKPGWPGPKKNDESLRELETMKQRIETLKRDAN 216

Query: 441 K 443
           K
Sbjct: 217 K 217


>M77697-1|AAA27896.3|  273|Caenorhabditis elegans Hypothetical
           protein B0303.2 protein.
          Length = 273

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
 Frame = +3

Query: 279 KDALLNKLTSSFASRTKE--ITWMKITKEFNKLNP-RHIRTMESIKMKWENLKRDVRKLS 449
           +D   N  TS +A   ++  I W++   +F+  N    I  +E+     + ++   RKL 
Sbjct: 86  RDRAENIYTSDYAPANRDTLINWIEDKSDFDWDNVCSWIANIEASMETGKQMQNKTRKLM 145

Query: 450 NNLLDINIDQLDEVKSRV 503
             +LD+N+ +   V+S V
Sbjct: 146 RAVLDVNVHESPVVQSIV 163


>AF166171-1|AAD49860.1|  611|Caenorhabditis elegans
           adducin-head-domain-related protein protein.
          Length = 611

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +3

Query: 474 DQLDEVKSRVVSMMCEADNRTEAAKLNIDLKLNDFEEQDEIVTN 605
           +QL+E+ S VV      + R E+ +L  D+K+  FEE  EI  N
Sbjct: 247 NQLNEINSFVVPKF---EGRQESEQLFRDVKVEQFEESAEISIN 287


>U29097-10|AAA68414.1|  348|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 29 protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 834 AICIQVFSLATFXVVLXFXPRLYSDFAQSM 745
           A+CI +FS  T   +  F P +++ F QS+
Sbjct: 244 AVCIIIFSQITCLGITSFVPSIFNQFRQSI 273


>L13200-3|AAA28192.1|  304|Caenorhabditis elegans C.elegans
           chromodomain proteinprotein 1 protein.
          Length = 304

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +3

Query: 474 DQLDEVKSRVVSMMCEADNRTEAAKLNIDLKLNDFEEQDEIVTNVAENETSATHEEI 644
           ++  EV+        E D + E   + ++ + N+ EE++E V    E E     EEI
Sbjct: 177 EESQEVEDLKEDEKMEEDEKEEEEDVQLESEKNEKEEEEEKVEEKKEEEEEEEEEEI 233


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,207,462
Number of Sequences: 27780
Number of extensions: 288554
Number of successful extensions: 777
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)