Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_N15
(912 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 41 2e-04
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 29 0.92
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi... 29 0.92
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 29 1.2
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz... 29 1.2
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 28 1.6
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 28 2.1
SPBC725.02 |mpr1|spy1|response regulator phosphotransferase |Sch... 28 2.1
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 27 2.8
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 27 4.9
SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple... 27 4.9
SPAC3A12.13c |||translation initiation factor eIF3 complex subun... 27 4.9
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar... 27 4.9
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1... 27 4.9
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 27 4.9
SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces pombe... 26 6.5
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch... 26 8.5
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 41.1 bits (92), Expect = 2e-04
Identities = 38/169 (22%), Positives = 69/169 (40%)
Frame = +3
Query: 288 ALKETTAADHGNIITKKGSHSDTDILSANEQKKRKIRKLKLDVKKASQSMTRSLDFTNND 467
A KE ++ K S + S+ E K+ ++K K KK S + ++++
Sbjct: 36 AAKEIAKQSSKTDVSPKKSKKEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSE 95
Query: 468 DDGSNAENTPKHKLLDCKSAEVFSFRLKRFNFDSSFDLPDSPTDSSSRTEEIVEIXXXXX 647
+ S++E+ + S+E S + + + +S ++SSS +E E
Sbjct: 96 SESSSSESESSSSESESSSSESSSSESEEEVIVKTEEKKESSSESSSSSESEEE------ 149
Query: 648 XXXXXXXXEKKEVKMCRKVEQEPDTDSESTSVSPEPFEDLEDXNEEERI 794
E+ VK+ K E D+ SES+S E + EEE +
Sbjct: 150 --------EEAVVKIEEKKESSSDSSSESSSSESESESSSSESEEEEEV 190
>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 198
Score = 29.1 bits (62), Expect = 0.92
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +3
Query: 387 RKIRKLKLDVKKASQSMTRSLDFTNNDDDGSNAENT 494
R++++ + + KK + S+ S + +NND D S E+T
Sbjct: 158 RRLKQKRFETKKNNFSVKESSNLSNNDSDASLDEDT 193
>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 29.1 bits (62), Expect = 0.92
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -1
Query: 306 RWSPSRLHPARPACCVDGGSSKT-PSLGLRLF 214
RW R PA +CC G + PS+ LR+F
Sbjct: 172 RWCVRRFSPASNSCCHSGAPVHSGPSMALRIF 203
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 28.7 bits (61), Expect = 1.2
Identities = 27/137 (19%), Positives = 59/137 (43%), Gaps = 3/137 (2%)
Frame = +3
Query: 219 NEDRAKGSLTSRRRHNTQAEPDGALKETTAADHGNIITKKGSHSDTDILSANEQKKRKIR 398
+E ++GS +S ++++E +++++ + + S D+D S++ + +
Sbjct: 155 SESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDS--ESESSSEDSDSSSSSSDSESESS 212
Query: 399 KLKLDVKKASQSMTRSLDFTNNDDDGSNAENTPKHKLLDCKSAEVFS---FRLKRFNFDS 569
D +S S +ND S++++ + D S+ S + DS
Sbjct: 213 SEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDS 272
Query: 570 SFDLPDSPTDSSSRTEE 620
S + DS DSSS + +
Sbjct: 273 SSNSSDSEDDSSSDSSD 289
Score = 26.6 bits (56), Expect = 4.9
Identities = 26/135 (19%), Positives = 56/135 (41%)
Frame = +3
Query: 216 TNEDRAKGSLTSRRRHNTQAEPDGALKETTAADHGNIITKKGSHSDTDILSANEQKKRKI 395
++E GS +S ++ +E + + ++ ++ + + S D+D S++ + +
Sbjct: 99 SSEASGSGS-SSDESDSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESES 157
Query: 396 RKLKLDVKKASQSMTRSLDFTNNDDDGSNAENTPKHKLLDCKSAEVFSFRLKRFNFDSSF 575
D +S S +ND S++++ + D S+ S +SS
Sbjct: 158 SSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSS----DSESESSS 213
Query: 576 DLPDSPTDSSSRTEE 620
+ DS + SSS E
Sbjct: 214 EGSDSSSSSSSSESE 228
>SPBC646.09c |int6|yin6|translation initiation factor
eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 28.7 bits (61), Expect = 1.2
Identities = 25/105 (23%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Frame = +3
Query: 270 QAEPDGALKETTAADH-GNIITK-KGSHSDTDILSANEQKKRKIRKLKLDVKKASQSMTR 443
QA+ D LK+T D+ N+ T G H+D D+ +A +K+R + + ++++ Q +
Sbjct: 50 QAKYD-LLKDTNMTDYVANLWTNLHGGHTDEDMANAFAEKRRSVLQELSELEEEVQGILG 108
Query: 444 SLDFTN-----NDDDGSNAENTPKH-KLLDCKSAEVFSFRLKRFN 560
L+ + D G N ++ +H + + A ++ F ++N
Sbjct: 109 VLENPDLIAALRQDKGQNLQHLQEHYNITPERIAVLYKFAQFQYN 153
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 28.3 bits (60), Expect = 1.6
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Frame = +3
Query: 333 KKGSHSDTDILSANEQKKRKIRKLKLDVKKASQSMTRSLDFTNNDDDG---SNAENTPKH 503
+K S D LS +E+K+ +K K K+ S+S S D ++DD S+A N K
Sbjct: 922 QKASEDDMS-LSDDEEKQSGKKKKKDRKKRKSKSKQESSDSGVSEDDEIPLSDARNKTKK 980
Query: 504 KLLDCKSAEVFSFRLKRFNFDSSFDLPDSPTDSSSRTEE 620
+ + + V S + + FD D + + SRT E
Sbjct: 981 RRV---NRRVIS---EEYTFDQDSDAEGNQEEEVSRTIE 1013
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 705 EQEPDTDSESTSVSPEPFEDLEDXNEEERISLLLN 809
E+E + ++TSV E E+L++ NE+ER+ +N
Sbjct: 46 EEENEDADQNTSVESES-EELDNENEDERVQKSVN 79
>SPBC725.02 |mpr1|spy1|response regulator phosphotransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 27.9 bits (59), Expect = 2.1
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +3
Query: 423 ASQSMTRSLDFTNN-DDDGSNAENTPKHKLLDCKSAEVFSFRLKRFNFDSSFD 578
A + ++D +N+ DD +NA+N P + A V S L +D SF+
Sbjct: 104 APEGTEETVDISNSISDDHANAKNLPAASVKALVGAGVLSDELSVIAYDMSFE 156
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 27.5 bits (58), Expect = 2.8
Identities = 16/67 (23%), Positives = 33/67 (49%)
Frame = +3
Query: 303 TAADHGNIITKKGSHSDTDILSANEQKKRKIRKLKLDVKKASQSMTRSLDFTNNDDDGSN 482
+ A+ N+ + + +S N+Q + + +L ++ A+Q +L T+++ D
Sbjct: 493 STAEVSNVRNDESKANSLSEISYNQQSECRSSELNVNEDSANQKEESALG-TSDNSDMYE 551
Query: 483 AENTPKH 503
ENTP H
Sbjct: 552 KENTPIH 558
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/66 (19%), Positives = 30/66 (45%)
Frame = +3
Query: 219 NEDRAKGSLTSRRRHNTQAEPDGALKETTAADHGNIITKKGSHSDTDILSANEQKKRKIR 398
NED + ++ +R+ + + + D GN ++ +D L + ++ KIR
Sbjct: 285 NEDNTQKPISKKRKSKKASHKYLSSRTAPNVDFGNFAKERHRENDVSELYSKTKRTSKIR 344
Query: 399 KLKLDV 416
+L ++
Sbjct: 345 ELYKEI 350
>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
beta subunit Tfg2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 26.6 bits (56), Expect = 4.9
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Frame = +3
Query: 276 EPDGALKETTAADHGNIITKKGSHSDTDILSANEQKKRKIRKLKLDVKKASQSMTRSLDF 455
+P+ LKE D I+ K+G ++ L + ++L ++ASQS + S+D
Sbjct: 221 QPEVYLKEVL--DSIAILNKRGPYALKYSLKPEYKGTMDAASVELRNQQASQSESSSIDH 278
Query: 456 TNN----DDDGSNAE 488
T D+ G+NAE
Sbjct: 279 TGKNTSPDNPGTNAE 293
>SPAC3A12.13c |||translation initiation factor eIF3 complex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 274
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 723 DSESTSVSPEPFEDLEDXNEEERISLLLN 809
DS+S+S + F+D ED +EEE L N
Sbjct: 25 DSQSSSKPKKRFDDEEDEDEEENKESLQN 53
>SPAC23H3.03c |||nitrogen permease regulator
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 26.6 bits (56), Expect = 4.9
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 337 FFVIMFP*SAAVVSFKAPSGSACVLCRRRLVKDPFAR-SSFVLAKYVIFDNILXECIVHY 161
FF + P +V+ +AP+GS + + PF S +V+ K + + + C HY
Sbjct: 23 FFALFDPLQGPIVACEAPAGSVTNVDGGKNCLLPFETISDYVIPKRELCNKTITVCTNHY 82
>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 386
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 705 EQEPDTDSESTSVSPEPFEDLEDXNEEERIS 797
E+E D + E+ S SPEP E E+ E++ ++
Sbjct: 349 EEEEDEEEEAESQSPEP-ETSEEEKEDKELA 378
>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1205
Score = 26.6 bits (56), Expect = 4.9
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 279 PDGALKETTAADHGNIITKKGSHSDTDILSANEQKKRKIRKL 404
P + + T H N+ KK S +D S+ +K K RKL
Sbjct: 1111 PVSSFAKQTTNKHANLKQKKTHSSKSDKKSSRRRKNEKRRKL 1152
>SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 26.2 bits (55), Expect = 6.5
Identities = 18/71 (25%), Positives = 30/71 (42%)
Frame = +3
Query: 372 NEQKKRKIRKLKLDVKKASQSMTRSLDFTNNDDDGSNAENTPKHKLLDCKSAEVFSFRLK 551
N QKK+KI + KA+ R + D + +EN L+ E+ S
Sbjct: 42 NAQKKKKISLPNVMTSKAAMFAARVASAVDQDPNDEESENFVYENLIPTNDDELHSPSAS 101
Query: 552 RFNFDSSFDLP 584
+F +++LP
Sbjct: 102 IHSF-QTYNLP 111
>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 563
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 307 AVVSFKAPSGSACVLCRRRLVK 242
A+ F+ S +C++CRRR VK
Sbjct: 7 ALKKFRKRSPKSCLICRRRKVK 28
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,108,602
Number of Sequences: 5004
Number of extensions: 60090
Number of successful extensions: 238
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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