Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_N15
(912 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53154-11|AAC25848.1| 390|Caenorhabditis elegans Hypothetical p... 36 0.053
U64857-15|AAC25858.1| 470|Caenorhabditis elegans Hypothetical p... 34 0.12
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 34 0.12
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 34 0.12
AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein. 33 0.28
AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp ge... 33 0.28
U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein ... 33 0.37
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 31 0.86
U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of ... 31 1.1
U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of ... 31 1.1
Z79695-4|CAB01969.3| 374|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z49908-3|CAA90094.2| 382|Caenorhabditis elegans Hypothetical pr... 29 3.5
U49945-4|AAC47924.1| 535|Caenorhabditis elegans Hypothetical pr... 29 3.5
U41548-2|AAA83204.1| 399|Caenorhabditis elegans Hypothetical pr... 29 3.5
AF047663-6|AAC04447.1| 368|Caenorhabditis elegans Hypothetical ... 29 3.5
Z99281-12|CAB16521.1| 649|Caenorhabditis elegans Hypothetical p... 29 4.6
AF016427-8|AAB65355.1| 513|Caenorhabditis elegans Hypothetical ... 29 4.6
Z81113-3|CAB03280.1| 267|Caenorhabditis elegans Hypothetical pr... 29 6.1
U29381-3|AAA68758.2| 617|Caenorhabditis elegans Hypothetical pr... 29 6.1
AF038618-9|AAB92066.1| 304|Caenorhabditis elegans Hypothetical ... 29 6.1
AC024817-3|AAK68524.1| 482|Caenorhabditis elegans Hypothetical ... 29 6.1
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p... 28 8.1
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr... 28 8.1
AC006733-3|AAF60488.2| 372|Caenorhabditis elegans Hypothetical ... 28 8.1
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp... 28 8.1
>U53154-11|AAC25848.1| 390|Caenorhabditis elegans Hypothetical
protein C33G8.2 protein.
Length = 390
Score = 35.5 bits (78), Expect = 0.053
Identities = 33/153 (21%), Positives = 61/153 (39%)
Frame = +3
Query: 333 KKGSHSDTDILSANEQKKRKIRKLKLDVKKASQSMTRSLDFTNNDDDGSNAENTPKHKLL 512
KK D + KK+K +K + D ++ Q + D N+DDD + + K K
Sbjct: 129 KKQEEEDKKKEEEEKDKKKKDKKKEEDDEEEEQKDKKKKDEKNDDDDEEDKKKDKKKKKD 188
Query: 513 DCKSAEVFSFRLKRFNFDSSFDLPDSPTDSSSRTEEIVEIXXXXXXXXXXXXXEKKEVKM 692
D E + K+ D D D ++ + ++ + +KK+ K
Sbjct: 189 DNDEEEKEKDKKKK---DKKKDDDDDEDENDKKKDKKKK---KDDKDDDENEDDKKKDKK 242
Query: 693 CRKVEQEPDTDSESTSVSPEPFEDLEDXNEEER 791
+K ++E D D E + + D +EE++
Sbjct: 243 KKKDDKEKDDDDEEEKDKKKKDKKKNDDDEEDK 275
>U64857-15|AAC25858.1| 470|Caenorhabditis elegans Hypothetical
protein C37C3.1 protein.
Length = 470
Score = 34.3 bits (75), Expect = 0.12
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = +2
Query: 302 HRRRSWKHNNKKRLSLRHRHFIRERAEEEENKKIKTRRQESQSID 436
H +S KH +K+ S RH R R E++ KK K RR+ S + D
Sbjct: 428 HHSKSRKHRSKRSESREERH--RRRKEKKREKKKKRRRRSSTTSD 470
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 34.3 bits (75), Expect = 0.12
Identities = 36/177 (20%), Positives = 73/177 (41%), Gaps = 5/177 (2%)
Frame = +3
Query: 273 AEPDGALKETTAADHGNIITKKGSH-SDTDILSANEQKKRKIR----KLKLDVKKASQSM 437
AE D K+ + + ++ + +D + L EQKK+ +++ + +K +Q
Sbjct: 13541 AEVDAVKKQKELEEKQRLESEAATKKADAEKLKLEEQKKKAAEIALIEIQKEQEKLAQEQ 13600
Query: 438 TRSLDFTNNDDDGSNAENTPKHKLLDCKSAEVFSFRLKRFNFDSSFDLPDSPTDSSSRTE 617
+R D + E+ K K + E + K+ + DS S++
Sbjct: 13601 SRLEDEAKKSAEKQKLESETKSKQTEEAPKESVDEKPKKKVLKKKTEKSDSSISQKSKSA 13660
Query: 618 EIVEIXXXXXXXXXXXXXEKKEVKMCRKVEQEPDTDSESTSVSPEPFEDLEDXNEEE 788
+ + EKK V+ KVEQ PD +S S ++ +P + E+ ++++
Sbjct: 13661 KST-VDAAETLESDFNLVEKKTVQ---KVEQSPD-ESTSATIKRDPAQKTEEISKQD 13712
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 34.3 bits (75), Expect = 0.12
Identities = 36/177 (20%), Positives = 73/177 (41%), Gaps = 5/177 (2%)
Frame = +3
Query: 273 AEPDGALKETTAADHGNIITKKGSH-SDTDILSANEQKKRKIR----KLKLDVKKASQSM 437
AE D K+ + + ++ + +D + L EQKK+ +++ + +K +Q
Sbjct: 13541 AEVDAVKKQKELEEKQRLESEAATKKADAEKLKLEEQKKKAAEIALIEIQKEQEKLAQEQ 13600
Query: 438 TRSLDFTNNDDDGSNAENTPKHKLLDCKSAEVFSFRLKRFNFDSSFDLPDSPTDSSSRTE 617
+R D + E+ K K + E + K+ + DS S++
Sbjct: 13601 SRLEDEAKKSAEKQKLESETKSKQTEEAPKESVDEKPKKKVLKKKTEKSDSSISQKSKSA 13660
Query: 618 EIVEIXXXXXXXXXXXXXEKKEVKMCRKVEQEPDTDSESTSVSPEPFEDLEDXNEEE 788
+ + EKK V+ KVEQ PD +S S ++ +P + E+ ++++
Sbjct: 13661 KST-VDAAETLESDFNLVEKKTVQ---KVEQSPD-ESTSATIKRDPAQKTEEISKQD 13712
>AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein.
Length = 1359
Score = 33.1 bits (72), Expect = 0.28
Identities = 32/160 (20%), Positives = 61/160 (38%)
Frame = +3
Query: 252 RRRHNTQAEPDGALKETTAADHGNIITKKGSHSDTDILSANEQKKRKIRKLKLDVKKASQ 431
+R+ ++ E D +E+ + S S++D E +K+ K K+D KK +
Sbjct: 58 KRKASSSEEDDDDEEESPRKSSKKSRKRAKSESESDESDEEEDRKKSKSKKKVDQKKKEK 117
Query: 432 SMTRSLDFTNNDDDGSNAENTPKHKLLDCKSAEVFSFRLKRFNFDSSFDLPDSPTDSSSR 611
S + ++ D+D S+ E K K K+ + S + + S +
Sbjct: 118 SKKKRTTSSSEDED-SDEEREQKSKKKSKKTKKQTSSESSE-ESEEERKVKKSKKNKEKS 175
Query: 612 TEEIVEIXXXXXXXXXXXXXEKKEVKMCRKVEQEPDTDSE 731
++ E KK +K K E E +++ E
Sbjct: 176 VKKRAETSEESDEDEKPSKKSKKGLKKKAKSESESESEDE 215
>AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp gene
related protein 1 protein.
Length = 1359
Score = 33.1 bits (72), Expect = 0.28
Identities = 32/160 (20%), Positives = 61/160 (38%)
Frame = +3
Query: 252 RRRHNTQAEPDGALKETTAADHGNIITKKGSHSDTDILSANEQKKRKIRKLKLDVKKASQ 431
+R+ ++ E D +E+ + S S++D E +K+ K K+D KK +
Sbjct: 58 KRKASSSEEDDDDEEESPRKSSKKSRKRAKSESESDESDEEEDRKKSKSKKKVDQKKKEK 117
Query: 432 SMTRSLDFTNNDDDGSNAENTPKHKLLDCKSAEVFSFRLKRFNFDSSFDLPDSPTDSSSR 611
S + ++ D+D S+ E K K K+ + S + + S +
Sbjct: 118 SKKKRTTSSSEDED-SDEEREQKSKKKSKKTKKQTSSESSE-ESEEERKVKKSKKNKEKS 175
Query: 612 TEEIVEIXXXXXXXXXXXXXEKKEVKMCRKVEQEPDTDSE 731
++ E KK +K K E E +++ E
Sbjct: 176 VKKRAETSEESDEDEKPSKKSKKGLKKKAKSESESESEDE 215
>U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein
ligase protein 1,isoform a protein.
Length = 1051
Score = 32.7 bits (71), Expect = 0.37
Identities = 32/105 (30%), Positives = 42/105 (40%), Gaps = 3/105 (2%)
Frame = +2
Query: 122 LVLNSLRKENLCKIMDYAFX*DIVEYNIFC*NKRRPSEGVFDEPPSTQHAGRAGWS--LE 295
L NSL L I+ + F D F N R SEG D PS +H GR S +
Sbjct: 53 LASNSLLPRPL-PILQHLFWGDRTGSTKFSTNDRYGSEGNLDMSPSRRHPGRPSSSATIS 111
Query: 296 GDHRRRSWKH-NNKKRLSLRHRHFIRERAEEEENKKIKTRRQESQ 427
RRR ++ N+ + L E EE + RQ +Q
Sbjct: 112 NSARRRRYRSCNSPEHLESESSQLTLESGSEEFRSLPRYIRQLNQ 156
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 31.5 bits (68), Expect = 0.86
Identities = 33/170 (19%), Positives = 61/170 (35%)
Frame = +3
Query: 255 RRHNTQAEPDGALKETTAADHGNIITKKGSHSDTDILSANEQKKRKIRKLKLDVKKASQS 434
++H+ +AE + ++++ + S S + S +E+ K +K KKA S
Sbjct: 198 KKHHKKAESSSSSSSSSSSS-----SSSSSSSSSSSESEDEKHHHKKHAVKKHHKKAESS 252
Query: 435 MTRSLDFTNNDDDGSNAENTPKHKLLDCKSAEVFSFRLKRFNFDSSFDLPDSPTDSSSRT 614
+ S +++ S+ + HK K + + SS S + SSS +
Sbjct: 253 SSSSSSSSSSSSSSSSEDEKHHHKKHAAKKHVKHHKKAASSSSSSSSSSSSSSSSSSSSS 312
Query: 615 EEIVEIXXXXXXXXXXXXXEKKEVKMCRKVEQEPDTDSESTSVSPEPFED 764
E + +K K + S S+S S ED
Sbjct: 313 SESEDEKKKKKVHHKKSHGKKHHKKAASSSSSSSSSSSSSSSSSSSESED 362
>U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform c protein.
Length = 1375
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/97 (19%), Positives = 41/97 (42%)
Frame = +3
Query: 342 SHSDTDILSANEQKKRKIRKLKLDVKKASQSMTRSLDFTNNDDDGSNAENTPKHKLLDCK 521
S S TD+LS + + + K ++ ++ + L T DD + ++ +
Sbjct: 1222 SESQTDVLSVGDTEMQTDEKEIFTIESQTEQPSTELQETQTDDVSFAGDVPTTDQITQSE 1281
Query: 522 SAEVFSFRLKRFNFDSSFDLPDSPTDSSSRTEEIVEI 632
SA+VF + D+ +P ++T+ +E+
Sbjct: 1282 SAQVFDSETQYALSIEEKDVQATPISFETQTQHSIEL 1318
>U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform b protein.
Length = 1720
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/97 (19%), Positives = 41/97 (42%)
Frame = +3
Query: 342 SHSDTDILSANEQKKRKIRKLKLDVKKASQSMTRSLDFTNNDDDGSNAENTPKHKLLDCK 521
S S TD+LS + + + K ++ ++ + L T DD + ++ +
Sbjct: 1222 SESQTDVLSVGDTEMQTDEKEIFTIESQTEQPSTELQETQTDDVSFAGDVPTTDQITQSE 1281
Query: 522 SAEVFSFRLKRFNFDSSFDLPDSPTDSSSRTEEIVEI 632
SA+VF + D+ +P ++T+ +E+
Sbjct: 1282 SAQVFDSETQYALSIEEKDVQATPISFETQTQHSIEL 1318
>Z79695-4|CAB01969.3| 374|Caenorhabditis elegans Hypothetical
protein F27D4.4a protein.
Length = 374
Score = 29.5 bits (63), Expect = 3.5
Identities = 22/85 (25%), Positives = 36/85 (42%)
Frame = +3
Query: 375 EQKKRKIRKLKLDVKKASQSMTRSLDFTNNDDDGSNAENTPKHKLLDCKSAEVFSFRLKR 554
++KK KI+ K + + NNDDD + K ++ ++ +VF
Sbjct: 265 KEKKEKIKSGKHNGMSGRDLFLYDANLVNNDDDEAGDIEMEKEEV--DENEKVFEIDANF 322
Query: 555 FNFDSSFDLPDSPTDSSSRTEEIVE 629
F FD + D TD S++ VE
Sbjct: 323 FKFDG---MDDELTDQMSKSSTAVE 344
>Z49908-3|CAA90094.2| 382|Caenorhabditis elegans Hypothetical
protein C07E3.3 protein.
Length = 382
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 672 EKKEVKMCRKVEQEPDTDSESTSVSPEPFEDLED 773
EK V+ R+V +E TD++ ++ + EPF+ ED
Sbjct: 16 EKTPVRGVRRVSREHQTDAQFSTETAEPFDFRED 49
>U49945-4|AAC47924.1| 535|Caenorhabditis elegans Hypothetical
protein C02H7.1 protein.
Length = 535
Score = 29.5 bits (63), Expect = 3.5
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Frame = +3
Query: 225 DRAKGSLTSRRRHNTQAEPDGALKETTAADHGNIITKKGS----HSDTD-ILSANEQKKR 389
D G T+R E GAL + I G SD D I++ +K +
Sbjct: 375 DEEDGDRTARIEDLVDEEDRGALVQKIMETKAEIEDGGGQDQVEESDADKIMTVEREKMK 434
Query: 390 KIRKLKLDVKKASQSMTRSLDFTNND 467
++++ D+ +++ + R DF N+D
Sbjct: 435 QLQEKLQDLTRSAYPLARLFDFANDD 460
>U41548-2|AAA83204.1| 399|Caenorhabditis elegans Hypothetical
protein M02F4.1 protein.
Length = 399
Score = 29.5 bits (63), Expect = 3.5
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Frame = +2
Query: 308 RRSWKHNN--KKRLSLRHRH-----FIRERAEEEENKKIKTRRQESQSIDDQI 445
R + +HNN + R SL HR + E EEEENK K R+ DD +
Sbjct: 199 RPTRRHNNNARGRSSLNHRDEDESDYENEDYEEEENKSRKANRRSRTDDDDNL 251
>AF047663-6|AAC04447.1| 368|Caenorhabditis elegans Hypothetical
protein W09G12.7 protein.
Length = 368
Score = 29.5 bits (63), Expect = 3.5
Identities = 22/98 (22%), Positives = 41/98 (41%)
Frame = +3
Query: 213 KTNEDRAKGSLTSRRRHNTQAEPDGALKETTAADHGNIITKKGSHSDTDILSANEQKKRK 392
K + + S +S ++ + DG K+ + + S +D +++ K+K
Sbjct: 101 KKKKSKKDSSDSSDSSDSSDSSDDGKKKKKKKSKKDSSDDSSDSSDSSDSSDSSDDDKKK 160
Query: 393 IRKLKLDVKKASQSMTRSLDFTNNDDDGSNAENTPKHK 506
+K K K S S D +++ DD S+ E K K
Sbjct: 161 KKKSKKSKNKGSSS-----DSSDSSDDSSDDEKPKKKK 193
>Z99281-12|CAB16521.1| 649|Caenorhabditis elegans Hypothetical
protein Y57G11C.20 protein.
Length = 649
Score = 29.1 bits (62), Expect = 4.6
Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
Frame = +2
Query: 299 DHRRRSWKHNNKKRLSLRHRHFIRERAEEEENKKIKTRRQ-ESQSIDDQIVGLHXXXXXX 475
+ + K N ++ RH H R+R E K ++ +Q E Q +D+
Sbjct: 291 EQEEKQKKENLERAEKERHDHIERQRQAEARAKALEQEKQEEKQKNEDRERATQKERREH 350
Query: 476 XXXXEHAQTQAPGLQKRRGLQFQTE 550
A+ +A L+K + + Q E
Sbjct: 351 LERHRQAEARAKALEKEKHERLQQE 375
>AF016427-8|AAB65355.1| 513|Caenorhabditis elegans Hypothetical
protein F32D1.9 protein.
Length = 513
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +2
Query: 302 HRRRSWKHNNKKRLSLRHRHFIRERAEEEENKKIKTRRQESQ 427
HR RS + +++ R R RER ++E++K ++RR + +
Sbjct: 434 HRSRSASGDRRRKRDDREREKRRERRGDDEDRKKRSRRGDEE 475
>Z81113-3|CAB03280.1| 267|Caenorhabditis elegans Hypothetical
protein T03F6.3 protein.
Length = 267
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 504 KLLDCKSAEVFSF-RLKRFNFDSSFDLPDSPTDS 602
KL++ +A V SF ++K FN D DLP T+S
Sbjct: 50 KLIEFYNAGVISFEKVKTFNMDEYVDLPRDHTES 83
>U29381-3|AAA68758.2| 617|Caenorhabditis elegans Hypothetical
protein F35D11.3 protein.
Length = 617
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 411 DVKKASQSMTRSLDFTNNDDDGSNAENTPKHKLLD 515
+ K++ Q M+R N SN N+P+H+ L+
Sbjct: 18 EAKRSPQPMSRGFPQRNMSTTSSNGSNSPRHRSLE 52
>AF038618-9|AAB92066.1| 304|Caenorhabditis elegans Hypothetical
protein F42G8.5 protein.
Length = 304
Score = 28.7 bits (61), Expect = 6.1
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +3
Query: 213 KTNEDRAKGSLTSRRRHNTQ 272
+TN +R+KGS SRRR N+Q
Sbjct: 284 RTNSNRSKGSGRSRRRENSQ 303
>AC024817-3|AAK68524.1| 482|Caenorhabditis elegans Hypothetical
protein Y54G2A.11a protein.
Length = 482
Score = 28.7 bits (61), Expect = 6.1
Identities = 18/87 (20%), Positives = 41/87 (47%)
Frame = +3
Query: 222 EDRAKGSLTSRRRHNTQAEPDGALKETTAADHGNIITKKGSHSDTDILSANEQKKRKIRK 401
EDR + N AEP+ ++E ++D + ++K S SD+D S ++ +
Sbjct: 21 EDRLDDDFSLNSTDNEAAEPEPIVEEPPSSDDDDTASEK-SFSDSDSDSDSDSLSESESE 79
Query: 402 LKLDVKKASQSMTRSLDFTNNDDDGSN 482
+ ++ ++ + N+D++G +
Sbjct: 80 ISEPEEEEAEEGAAAEILENSDNEGED 106
>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/37 (48%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +3
Query: 327 ITKKGS-HSDTDILSANEQKKRKIRKLKLDVKKASQS 434
I K G H D KR IRKLKL KK SQS
Sbjct: 844 IKKAGQYHIDMQKQIVKRSLKRAIRKLKLTTKKDSQS 880
>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/37 (48%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +3
Query: 327 ITKKGS-HSDTDILSANEQKKRKIRKLKLDVKKASQS 434
I K G H D KR IRKLKL KK SQS
Sbjct: 844 IKKAGQYHIDMQKQIVKRSLKRAIRKLKLTTKKDSQS 880
>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical protein
T28C6.9 protein.
Length = 1861
Score = 28.3 bits (60), Expect = 8.1
Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Frame = +3
Query: 384 KRKIRKLKLDVKKASQSMTRSLDFTN----NDDDGSNAENTPKHKLLDCKSAEVFSFRLK 551
K++++ +++++KAS++ T + N NDDDG K+L+ K E L+
Sbjct: 1502 KKELKLKEIELQKASEASTTASSEWNDDGWNDDDGEIDRMKDTQKVLEMK-VEALQDELQ 1560
Query: 552 RFNFDSSFDLPDSPTDSSSRTEEI 623
R D+ +L ++ + S+ ++
Sbjct: 1561 RLK-DNEIELTETISALQSKLYDV 1583
>AC006733-3|AAF60488.2| 372|Caenorhabditis elegans Hypothetical
protein Y32H12A.1 protein.
Length = 372
Score = 28.3 bits (60), Expect = 8.1
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = -2
Query: 296 LQGSIRLGLRVVSTAARQRPLRSVFVCFSK---ICYIRQYLTGMHSPL-FCINSLYVTNL 129
L G I LGL V +R R L + C+S+ YI Y + +SP+ F I L + N+
Sbjct: 186 LPGLISLGLHVTYRFSRPRLLELIHRCYSEDFSYSYISGYESFYNSPIPFTIAMLLLPNI 245
>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
subunit Med13 protein.
Length = 2862
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/37 (48%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +3
Query: 327 ITKKGS-HSDTDILSANEQKKRKIRKLKLDVKKASQS 434
I K G H D KR IRKLKL KK SQS
Sbjct: 844 IKKAGQYHIDMQKQIVKRSLKRAIRKLKLTTKKDSQS 880
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,222,256
Number of Sequences: 27780
Number of extensions: 334177
Number of successful extensions: 1588
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1570
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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