Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_N14
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    28   2.1  
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe...    26   8.3  
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    26   8.3  

>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 608 RTARSRCTRSAHPCPRLRYCGRYASCGARTQ 516
           R+  SRC +S   C R R CGR    G  ++
Sbjct: 339 RSRCSRCKKSKKGCDRQRPCGRCRDAGLNSE 369


>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = +2

Query: 230 SVIKLEKSAGVMFLPSVKIQHKLIXSKPTCNGSVCHLEDRPRHVKRESREITELPHSS 403
           S I+ + + G  F+ S      +   +PT N  V  +  + +  +  S  +TE P SS
Sbjct: 131 SSIEKKPAEGNAFIVSTSFLSNVFLEQPTSNAVVSEVNPQQQKSQDSSSFVTEKPASS 188


>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -3

Query: 541 THLAAPELRPVQPLTLSVRIGIRFRIGLFPSVYFRSA--MLFAVTT 410
           TH+   +LRP       +  G  F +  FP+ +F S   + FA+ T
Sbjct: 204 THIILRDLRPAGSKKRVIPTGYGFNLVSFPNYFFESLGWLFFALLT 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,176,546
Number of Sequences: 5004
Number of extensions: 62394
Number of successful extensions: 171
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)