Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_N14
         (894 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF073344-1|AAD42992.1|  521|Homo sapiens ubiquitin-specific prot...    31   4.3  

>AF073344-1|AAD42992.1|  521|Homo sapiens ubiquitin-specific
           protease 3 protein.
          Length = 521

 Score = 31.5 bits (68), Expect = 4.3
 Identities = 36/147 (24%), Positives = 57/147 (38%), Gaps = 4/147 (2%)
 Frame = +2

Query: 35  PLTVXXISQFKKIERVFPFALLCRRVASDGYRSDFACLKLVKKLISESINFLTAMANSIM 214
           P     +  F+ +  VFP    CRR+          CL++ K  I+ +   +TA+   I+
Sbjct: 268 PFGPPTLGNFRAVSTVFPAQQFCRRI--------LLCLQVNKCCINGASTVVTAIFGGIL 319

Query: 215 RLGLRSVI-KLEKSAGVMFLP---SVKIQHKLIXSKPTCNGSVCHLEDRPRHVKRESREI 382
           +  +  +I   E      FL     +  Q +   SK   NG VC L D  R    +  E+
Sbjct: 320 QNEVNCLICGTESRKFDPFLDLSLDIPSQFRSKRSKNQENGPVCSLRDCLRSF-TDLEEL 378

Query: 383 TELPHSSLRRCYSKQHGRPEIDRRKQP 463
            E       +C  KQ    +   +K P
Sbjct: 379 DETELYMCHKCKKKQKSTKKFWIQKLP 405


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,660,538
Number of Sequences: 237096
Number of extensions: 2380342
Number of successful extensions: 8720
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 8469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8717
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11492727354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)