Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_N14
         (894 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical pr...    29   5.9  
AC006830-7|AAK68613.2|  479|Caenorhabditis elegans Hypothetical ...    28   7.8  

>U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical
           protein T04G9.6 protein.
          Length = 601

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 110 VASDGYRSDFACLKLVKKLISESINFLTAMANS 208
           V SD Y SDFA   + +   SE+ ++LTA  +S
Sbjct: 343 VVSDSYSSDFASTAIPEASESENSDYLTASVSS 375


>AC006830-7|AAK68613.2|  479|Caenorhabditis elegans Hypothetical
           protein ZK105.6 protein.
          Length = 479

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 314 TCNGSVCHLEDRPRHVKRESREITELPHSSLRRCYSKQH-GRPEIDR 451
           TC  S C+  D  R +  +  E  E+ +S    C  K H  RP++ +
Sbjct: 160 TCMNSTCNAPDLDRRMADDMCEAIEMKNSPFMACQFKIHKERPDLSK 206


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,017,181
Number of Sequences: 27780
Number of extensions: 369490
Number of successful extensions: 914
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)