Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_N13
         (957 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0296 - 2156895-2157160,2157435-2157527,2157932-2158031,215...    29   4.1  
02_01_0275 - 1828300-1828344,1828396-1828531,1828623-1829317           29   5.5  
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    29   7.2  

>06_01_0296 -
           2156895-2157160,2157435-2157527,2157932-2158031,
           2158634-2158738,2158832-2158972,2159056-2159568
          Length = 405

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +1

Query: 859 IXPXRGGXPPXRXXRSXPPPXXGXCSPXPP 948
           I P R G P  R   S PPP     +P PP
Sbjct: 59  ILPFRRGRPLARSYDSPPPPAAAAAAPPPP 88


>02_01_0275 - 1828300-1828344,1828396-1828531,1828623-1829317
          Length = 291

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
 Frame = -3

Query: 445 PIRKPPX--PXXWPXXLWXXXPPXPPPGP 365
           P RK P   P   P   W   PP PPP P
Sbjct: 114 PPRKKPQFQPPPQPPRAWDPSPPPPPPAP 142


>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -3

Query: 433 PPXPXXWPXXLWXXXPPXPPPGPXTXN 353
           PP P   P  L    PP PPP P   N
Sbjct: 588 PPPPPPLPNCLVPSPPPPPPPPPILPN 614


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.146    0.498 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,890,379
Number of Sequences: 37544
Number of extensions: 285959
Number of successful extensions: 789
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2764678640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)