Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_N13
         (957 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    33   0.23 
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    33   0.23 
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    33   0.23 
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    29   4.9  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    29   4.9  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    29   4.9  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = +3

Query: 864 PPAGGXPPXSXXXVXPPPXXGXVFPKXPP 950
           PP GG PP S     PPP  G   P  PP
Sbjct: 746 PPPGGLPPISGGPPPPPPPPGGCPPPPPP 774


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = +3

Query: 864 PPAGGXPPXSXXXVXPPPXXGXVFPKXPP 950
           PP GG PP S     PPP  G   P  PP
Sbjct: 746 PPPGGLPPISGGPPPPPPPPGGCPPPPPP 774


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = +3

Query: 864 PPAGGXPPXSXXXVXPPPXXGXVFPKXPP 950
           PP GG PP S     PPP  G   P  PP
Sbjct: 329 PPPGGLPPISGGPPPPPPPPGGCPPPPPP 357


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +3

Query: 864 PPAGGXPPXSXXXVXPPPXXGXVFPKXPP 950
           PP G  PP       PPP  G   P  PP
Sbjct: 275 PPTGSPPPPPAGGSPPPPRAGSPPPPPPP 303



 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = +1

Query: 865 PXRGGXPPXRXXRSXPPPXXGXCSPXPP 948
           P R G PP     S PPP  G  SP PP
Sbjct: 266 PPRTGSPPPPPTGSPPPPPAGG-SPPPP 292


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +3

Query: 864 PPAGGXPPXSXXXVXPPPXXGXVFPKXPP 950
           PP G  PP       PPP  G   P  PP
Sbjct: 296 PPTGSPPPPPAGGSPPPPRAGSPPPPPPP 324



 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = +1

Query: 865 PXRGGXPPXRXXRSXPPPXXGXCSPXPP 948
           P R G PP     S PPP  G  SP PP
Sbjct: 287 PPRTGSPPPPPTGSPPPPPAGG-SPPPP 313


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +3

Query: 864 PPAGGXPPXSXXXVXPPPXXGXVFPKXPP 950
           PP G  PP       PPP  G   P  PP
Sbjct: 281 PPTGSPPPPPAGGSPPPPRAGSPPPPPPP 309



 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = +1

Query: 865 PXRGGXPPXRXXRSXPPPXXGXCSPXPP 948
           P R G PP     S PPP  G  SP PP
Sbjct: 272 PPRTGSPPPPPTGSPPPPPAGG-SPPPP 298


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.146    0.498 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,937,203
Number of Sequences: 27780
Number of extensions: 184510
Number of successful extensions: 608
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2486134266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)