Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_N11
         (886 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC064495-1|AAH64495.1|  299|Homo sapiens RCOR1 protein protein.        32   3.2  
BC051003-1|AAH51003.1|  293|Homo sapiens RCOR1 protein protein.        32   3.2  
BC019963-1|AAH19963.1|  827|Homo sapiens ANKRD17 protein protein.      32   3.2  
AF155595-1|AAF01498.1|  482|Homo sapiens CoREST protein protein.       32   3.2  
AB014597-1|BAA31672.2| 2486|Homo sapiens KIAA0697 protein protein.     32   3.2  
AF137396-7|AAG41681.1|  326|Homo sapiens HOR5'Beta7 protein.           31   4.2  

>BC064495-1|AAH64495.1|  299|Homo sapiens RCOR1 protein protein.
          Length = 299

 Score = 31.9 bits (69), Expect = 3.2
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = -2

Query: 693 EKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRVSPPLT*AS 565
           EKG +VSGKR+GRN  A   ++      +  +C  SP  T AS
Sbjct: 3   EKGPEVSGKRRGRNNAAASASAAAASAAASAAC-ASPAATAAS 44


>BC051003-1|AAH51003.1|  293|Homo sapiens RCOR1 protein protein.
          Length = 293

 Score = 31.9 bits (69), Expect = 3.2
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = -2

Query: 693 EKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRVSPPLT*AS 565
           EKG +VSGKR+GRN  A   ++      +  +C  SP  T AS
Sbjct: 3   EKGPEVSGKRRGRNNAAASASAAAASAAASAAC-ASPAATAAS 44


>BC019963-1|AAH19963.1|  827|Homo sapiens ANKRD17 protein protein.
          Length = 827

 Score = 31.9 bits (69), Expect = 3.2
 Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
 Frame = -1

Query: 817 DKAQRSAERGVRAHSPAWSERPTPN*DTYSVSYEKAPRFPKGERRTGIR*AAGSEQESAR 638
           D + +S   GVRA SPA S  P  +    +VS ++    P G  R+      G+   S  
Sbjct: 611 DSSAQSVSSGVRAPSPAPSSVPLGSEKPSNVSQDRKVPVPIGTERSARIRQTGTSAPSVI 670

Query: 637 GSFQGETPGIFIVLS--GFATSDLSVDFCDARXGGRSLWKNASN 512
           GS    + G   + S  G   +   VD+C+   G   + +  S+
Sbjct: 671 GSNLSTSVGHSGIWSFEGIGGNQDKVDWCNPGMGNPMIHRPMSD 714


>AF155595-1|AAF01498.1|  482|Homo sapiens CoREST protein protein.
          Length = 482

 Score = 31.9 bits (69), Expect = 3.2
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = -2

Query: 693 EKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRVSPPLT*AS 565
           EKG +VSGKR+GRN  A   ++      +  +C  SP  T AS
Sbjct: 3   EKGPEVSGKRRGRNNAAASASAAAASAAASAAC-ASPAATAAS 44


>AB014597-1|BAA31672.2| 2486|Homo sapiens KIAA0697 protein protein.
          Length = 2486

 Score = 31.9 bits (69), Expect = 3.2
 Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
 Frame = -1

Query: 817  DKAQRSAERGVRAHSPAWSERPTPN*DTYSVSYEKAPRFPKGERRTGIR*AAGSEQESAR 638
            D + +S   GVRA SPA S  P  +    +VS ++    P G  R+      G+   S  
Sbjct: 2270 DSSAQSVSSGVRAPSPAPSSVPLGSEKPSNVSQDRKVPVPIGTERSARIRQTGTSAPSVI 2329

Query: 637  GSFQGETPGIFIVLS--GFATSDLSVDFCDARXGGRSLWKNASN 512
            GS    + G   + S  G   +   VD+C+   G   + +  S+
Sbjct: 2330 GSNLSTSVGHSGIWSFEGIGGNQDKVDWCNPGMGNPMIHRPMSD 2373


>AF137396-7|AAG41681.1|  326|Homo sapiens HOR5'Beta7 protein.
          Length = 326

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +1

Query: 637 LVRSPVPTLPLTGYLSAFLPSGSVALSHS 723
           + R PV T+P+   L AF   GSV LSHS
Sbjct: 161 IFRGPVATIPIVLLLKAFPYCGSVVLSHS 189


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,055,998
Number of Sequences: 237096
Number of extensions: 2791525
Number of successful extensions: 10690
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10689
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11326166088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)