Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_N10
         (907 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.      31   1.5  
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o...    31   1.5  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    29   3.5  

>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
          Length = 1475

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
 Frame = +2

Query: 719  NRKXAAVXGGXSXGSGPPXPSXHQNSXXXXXXGRPXPXXE----XXXXPTAXXPPXKXPP 886
            N++ A+   G   G GPP    H N+       RP    +        P+   P  +  P
Sbjct: 1366 NKQVASYAQGLPPGMGPPVVKPHGNNYQASQWVRPPTHRDSSHSYHGMPSLGPPQLQREP 1425

Query: 887  XAPPP 901
             APPP
Sbjct: 1426 PAPPP 1430


>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
            pal-1 protein 3,isoform a protein.
          Length = 1475

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
 Frame = +2

Query: 719  NRKXAAVXGGXSXGSGPPXPSXHQNSXXXXXXGRPXPXXE----XXXXPTAXXPPXKXPP 886
            N++ A+   G   G GPP    H N+       RP    +        P+   P  +  P
Sbjct: 1366 NKQVASYAQGLPPGMGPPVVKPHGNNYQASQWVRPPTHRDSSHSYHGMPSLGPPQLQREP 1425

Query: 887  XAPPP 901
             APPP
Sbjct: 1426 PAPPP 1430


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/46 (28%), Positives = 16/46 (34%)
 Frame = +2

Query: 761 SGPPXPSXHQNSXXXXXXGRPXPXXEXXXXPTAXXPPXKXPPXAPP 898
           + PP P   + S        P P       P    PP + PP  PP
Sbjct: 120 ASPPPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPP 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,335,032
Number of Sequences: 27780
Number of extensions: 154294
Number of successful extensions: 464
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)