Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_N07
         (855 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968...    31   1.5  
06_03_0335 + 19662933-19663334,19663358-19664023                       29   4.7  
08_01_0156 - 1233431-1233925                                           29   6.2  
06_03_0218 + 18219956-18220555                                         29   6.2  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.3  
03_06_0149 - 31987183-31987630,31987813-31987874                       28   8.3  
03_04_0061 - 16949038-16950006                                         28   8.3  

>06_03_0833 -
           25196091-25196372,25196464-25196565,25196640-25196838,
           25196978-25197278,25197471-25197645,25197842-25198012,
           25198207-25198239
          Length = 420

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = +3

Query: 519 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLP 677
           CWR  +        T  D Q    +    +KD    P + PSC L+F P   P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQP 335


>06_03_0335 + 19662933-19663334,19663358-19664023
          Length = 355

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 19/54 (35%), Positives = 24/54 (44%)
 Frame = -3

Query: 787 RAHSQLGANDLHRTEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRG 626
           R H  L A  LH   +P A   R+R A RR   G+V+        R   GA+ G
Sbjct: 140 RLHRPLAARPLHVPGVPRAPGARRRAAQRRR--GRVAAAAAAAPVRPVAGAAHG 191


>08_01_0156 - 1233431-1233925
          Length = 164

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
 Frame = -3

Query: 772 LGANDLHRTEIPTA*AMRKRHASRREK--GGQVSGKRQGRNRRAHEGASRGKRLVSL*SC 599
           LG  D   TE+  A A     A+R E+  GG   G R G   RA +   +G     +   
Sbjct: 89  LGDADATATEVDAAAAAEAEAAARGERGDGGGDGGGRAGGRGRARDEREKGAAADRVLGV 148

Query: 598 RVSPPLT 578
           R SP ++
Sbjct: 149 RASPTVS 155


>06_03_0218 + 18219956-18220555
          Length = 199

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 23/71 (32%), Positives = 31/71 (43%)
 Frame = -3

Query: 823 PDKAXRSG*TGVRAHSQLGANDLHRTEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAH 644
           P  + R+G  G+    ++ A    +T  P     R R   R E  G  + KR+GR R   
Sbjct: 75  PVLSPRNG--GLTEGEEVAARPREKTARPDG--ARARRERRLEAAG--AEKREGRRRGGS 128

Query: 643 EGASRGKRLVS 611
            G  RGKR  S
Sbjct: 129 SGGLRGKRRAS 139


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +2

Query: 299 NESAN---ARGEAVCVLGALPLPRSLTRCAR 382
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>03_06_0149 - 31987183-31987630,31987813-31987874
          Length = 169

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 727 AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRG 626
           A+ + H   R +   +  +R+GR R AHEG   G
Sbjct: 76  AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIG 109


>03_04_0061 - 16949038-16950006
          Length = 322

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 601 RTIKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGKRGA 717
           RT+K PG+   ++PRA+  + P  Y   VR +   +R A
Sbjct: 255 RTMKGPGLGGARVPRAVFRASPRRYYAAVRTARKARRSA 293


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,383,155
Number of Sequences: 37544
Number of extensions: 523286
Number of successful extensions: 1633
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1633
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)