Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_N06
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    27   2.8  
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    27   4.8  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   4.8  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    26   6.4  
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc...    26   6.4  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   6.4  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    26   6.4  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   8.5  
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    26   8.5  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    26   8.5  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    26   8.5  

>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
 Frame = +2

Query: 287 PIGQPKVMTEINPNMPENPDLLISDK----PNLIPQHLNQHS--PFDRSN--TTAKEKKQ 442
           P  Q K +T  N +   + +  ISDK    P+ IP   + HS  PF+  +   T K    
Sbjct: 649 PSRQTKTVTSANSSNIRDMEHTISDKPRSEPDAIPSSKSMHSNKPFEEKSEKPTTKRLVT 708

Query: 443 EPKSQDTSGGKVLSKRKGD 499
            P + + S    + KR+ D
Sbjct: 709 NPSNVNASWHSNMLKRQED 727


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
 Frame = +2

Query: 539 TELENLIRNRQEPSKHSLSIDN-GGKSVNYCTRDE-ENYKKQCT----DVDVVNKPIDNE 700
           TE+E +I+N  + SK+ L++ +     ++    DE E + +  T    DV   NKP +NE
Sbjct: 609 TEMEKVIKNLIDKSKYDLALQSLQSLRLHSILEDEVERFNEYLTRLKKDVMQNNKPKENE 668

Query: 701 FSLRKQNEGSQI 736
              + ++ G  I
Sbjct: 669 LINKIRSSGLDI 680


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = -2

Query: 223  YCFKYSIACYFFCP-CRQTSTRL 158
            Y +KYS A +F CP CR  S  L
Sbjct: 1458 YYYKYSTAKFFMCPLCRSLSNVL 1480


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
 Frame = +2

Query: 323 PNMPENPDLLISDKPNL---IPQHLNQ-HSPFDR 412
           P++PENP  L  +KP+L   I   +N+  +P DR
Sbjct: 151 PSIPENPSSLTGEKPHLYARIDSAINEPFTPSDR 184


>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
           Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 593

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = +2

Query: 518 NKKCKLSTELENLIRNRQEPSKHSLSIDNGGKSVNYCTRDEENYKKQCTDVD 673
           N++ K S +L+ + +NR++  +   +I   GKS      +EE +  +C ++D
Sbjct: 110 NQERKRSDKLKTMKKNRKQSFQRKRNILEDGKS------EEEKFPMKCDEID 155


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 280  NKSNWPAQSHDRDKSQHARKSRPVDI*QTKPHTPASKST 396
            +KS   +Q+ D  K+  ARK + ++  QT P    SK +
Sbjct: 1571 SKSRRGSQNRDSKKTGKARKDKGINNNQTSPQNKPSKES 1609


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +2

Query: 341 PDLLISDKPNLIPQHLNQHSPFD--RSNTTAKEKKQEPKSQDT 463
           P  L  D PN IP  +N+ SP D  R  + ++ + + P   DT
Sbjct: 208 PSFLAMD-PNNIPPEINKVSPHDDLRPLSDSRRRARRPHPSDT 249


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/92 (16%), Positives = 37/92 (40%)
 Frame = +2

Query: 461 TSGGKVLSKRKGDEELMIVNKKCKLSTELENLIRNRQEPSKHSLSIDNGGKSVNYCTRDE 640
           T+   ++ + K +   +    + KL ++  N +      S+ S++ DN  K+     +  
Sbjct: 2   TTNPDIVKQTKNEIHQVTSRVQEKLDSKSTNAVEQNNNSSQASVTKDNKKKAAKRAKKKA 61

Query: 641 ENYKKQCTDVDVVNKPIDNEFSLRKQNEGSQI 736
              KKQ       + P++     +++ +   I
Sbjct: 62  AKKKKQSAAASASSTPVEEAQHAQEEQQEQTI 93


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 251 QKITSPCVSETNPIGQPKVMTEINPN 328
           +K  + CV + NP  +PK+     PN
Sbjct: 689 EKFRNSCVMDENPAYRPKIFVSHGPN 714


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = +2

Query: 317  INPNMPENPDLLISD--KPNLIPQHLNQHSPFDRSNTTAKEKKQEPKSQDTSGGKVLSKR 490
            I PN P  PD L++   KP L P+  +  S     N T       P  + +S     S+R
Sbjct: 1001 IKPNKPTKPDHLVAPRVKPLLPPRSGSSSSGVPAPNLTPVNVPPTPPPRKSSA----SQR 1056

Query: 491  KGD 499
             GD
Sbjct: 1057 SGD 1059


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 320 NPNMPENPDLLISDKPNLIPQHLNQHSPFDRSNTTAKE 433
           NP M E+P +L S   N  PQ    +  FD   +  KE
Sbjct: 46  NPGMNESPKILDSSFENSNPQDGPNYEDFDFMGSIHKE 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,336,190
Number of Sequences: 5004
Number of extensions: 71933
Number of successful extensions: 254
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)