Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_N06
(905 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L13200-3|AAA28192.1| 304|Caenorhabditis elegans C.elegans chrom... 33 0.37
U64855-1|AAB04980.1| 594|Caenorhabditis elegans Hypothetical pr... 31 1.1
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 31 1.1
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 31 1.1
AL132902-10|CAB82002.1| 286|Caenorhabditis elegans Hypothetical... 31 1.5
U80437-19|AAB37630.2| 580|Caenorhabditis elegans Conserved olig... 30 2.0
U88172-8|AAB42258.1| 312|Caenorhabditis elegans Hypothetical pr... 30 2.6
U80029-10|AAB37589.1| 460|Caenorhabditis elegans Hypothetical p... 30 2.6
U80029-9|AAB37588.1| 459|Caenorhabditis elegans Hypothetical pr... 30 2.6
Z72502-1|CAA96585.2| 430|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z22176-1|CAA80142.1| 724|Caenorhabditis elegans Hypothetical pr... 29 4.6
AL132949-13|CAB70106.2| 425|Caenorhabditis elegans Hypothetical... 29 4.6
AF197575-1|AAF18441.1| 425|Caenorhabditis elegans ASC-1 protein. 29 4.6
AF002197-6|AAD34661.1| 446|Caenorhabditis elegans Hypothetical ... 29 4.6
U00050-6|AAM22064.1| 208|Caenorhabditis elegans Hypothetical pr... 28 8.0
U00050-5|AAM22063.1| 291|Caenorhabditis elegans Hypothetical pr... 28 8.0
L13200-7|AAA28189.1| 206|Caenorhabditis elegans Prion-like-(q/n... 28 8.0
AF026202-1|AAZ82858.1| 755|Caenorhabditis elegans Histone deace... 28 8.0
>L13200-3|AAA28192.1| 304|Caenorhabditis elegans C.elegans
chromodomain proteinprotein 1 protein.
Length = 304
Score = 32.7 bits (71), Expect = 0.37
Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 1/115 (0%)
Frame = +2
Query: 434 KKQEPKSQDTSGGKVLSKRKGDEELMIVNKKCKLSTELENLIRNRQEP-SKHSLSIDNGG 610
KK PK Q +GG + DEE +KK K E E + + +EP K +
Sbjct: 108 KKSPPKRQRLAGGDIRPDSDTDEEHSSADKKSKAEDEEE--VEDDEEPVPKKKKEVQEEP 165
Query: 611 KSVNYCTRDEENYKKQCTDVDVVNKPIDNEFSLRKQNEGSQISSTQTEPVLESVK 775
+ ++E ++ D+ K ++E +++ E Q+ S + E E K
Sbjct: 166 EEEESVEGEDEEESQEVEDLKEDEKMEEDE---KEEEEDVQLESEKNEKEEEEEK 217
>U64855-1|AAB04980.1| 594|Caenorhabditis elegans Hypothetical
protein ZK742.2 protein.
Length = 594
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = +2
Query: 599 DNGGKSVNYCTRDEENYKKQ---CTDVDVVNKPIDNEF-SLRKQNEGSQISSTQTEPVLE 766
D+ G+ +N R EENY+K+ + D + + I+ E+ S K+ + + +T +E V
Sbjct: 497 DDEGRPINEEDRLEENYRKEQNHLKEADKIRQMIEKEYESKTKRRKKHDVDTTASEDVRN 556
Query: 767 SVKK 778
++K
Sbjct: 557 RLQK 560
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 31.1 bits (67), Expect = 1.1
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Frame = +2
Query: 428 KEKKQEPKSQDTSGGK-VLSKRKGDEELMI--VNKKCKLSTELENLIRNR----QEPSKH 586
K K++P+S++ SGGK SK K +E+ I +NK K E E + + + QE
Sbjct: 10859 KSIKKKPESREVSGGKSEKSKEKESDEMSIQQLNKSVKKKPENEAVTQGKSGKSQEQESD 10918
Query: 587 SLSIDNGGKSV 619
+SI KS+
Sbjct: 10919 KMSIQALNKSM 10929
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 31.1 bits (67), Expect = 1.1
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Frame = +2
Query: 428 KEKKQEPKSQDTSGGK-VLSKRKGDEELMI--VNKKCKLSTELENLIRNR----QEPSKH 586
K K++P+S++ SGGK SK K +E+ I +NK K E E + + + QE
Sbjct: 10859 KSIKKKPESREVSGGKSEKSKEKESDEMSIQQLNKSVKKKPENEAVTQGKSGKSQEQESD 10918
Query: 587 SLSIDNGGKSV 619
+SI KS+
Sbjct: 10919 KMSIQALNKSM 10929
>AL132902-10|CAB82002.1| 286|Caenorhabditis elegans Hypothetical
protein Y71A12B.11 protein.
Length = 286
Score = 30.7 bits (66), Expect = 1.5
Identities = 21/87 (24%), Positives = 38/87 (43%)
Frame = +2
Query: 407 DRSNTTAKEKKQEPKSQDTSGGKVLSKRKGDEELMIVNKKCKLSTELENLIRNRQEPSKH 586
D + + E + E +S+D S + + + +EE+ ++ E L + E S
Sbjct: 112 DSESDASDESESESESEDESESEGFDESEDEEEVPKETGTYAFESKPEALDDSESEASDV 171
Query: 587 SLSIDNGGKSVNYCTRDEENYKKQCTD 667
S S D + + DEE ++ CTD
Sbjct: 172 SESKDESESEGSDDSEDEEYVEETCTD 198
>U80437-19|AAB37630.2| 580|Caenorhabditis elegans Conserved
oligomeric golgi (cog)component protein 5 protein.
Length = 580
Score = 30.3 bits (65), Expect = 2.0
Identities = 24/118 (20%), Positives = 54/118 (45%), Gaps = 2/118 (1%)
Frame = +2
Query: 431 EKKQEPKSQDTSGGKVLSKRKGDEELMIVNKKCKLSTELENLIRNRQEPSKHSLSIDNGG 610
E K EP ++ + S++ E+ + + + E ++ +E ++ + ++NGG
Sbjct: 144 EPKPEPITETEASPSKASEKDAAVEVSVEKVDAETAQESDSPQEAEKEKTEPQVELENGG 203
Query: 611 KSVNYCTRDE--ENYKKQCTDVDVVNKPIDNEFSLRKQNEGSQISSTQTEPVLESVKK 778
+ + RDE E ++ D D ++ D+E +K +E + E V++ K+
Sbjct: 204 QEEDEPDRDESIEKQPEKEDDGDELDYG-DDEEKEQKDDESMDAEDAKEEKVVQIEKE 260
>U88172-8|AAB42258.1| 312|Caenorhabditis elegans Hypothetical
protein ZK354.3 protein.
Length = 312
Score = 29.9 bits (64), Expect = 2.6
Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 4/127 (3%)
Frame = +2
Query: 428 KEKKQEPKSQDTSGGKVLSKRKGDEELMIVNKKCKLSTELENLIRNRQEPSKHSLSIDNG 607
+EKK+E K D K ++ K D++ +K KLS + ++ ++ K D+
Sbjct: 77 EEKKEEEKKADDEKKK--TEEKDDKKSKKTEEKDKLSVKKTQETKSERKDKKDERKEDDK 134
Query: 608 GKSVNYCTRDEENYKKQCTDVDVVNKPID---NEFSLRKQNEGSQISSTQ-TEPVLESVK 775
+ ++DEE K + D K D E +K+ ++ + E E K
Sbjct: 135 KEENKEKSKDEEKKKDEVKDKKEDEKMDDKKPGEKEEKKEEFKKEMKKEEKKEEKKEEPK 194
Query: 776 KXWSPRK 796
K +P+K
Sbjct: 195 KNDAPKK 201
>U80029-10|AAB37589.1| 460|Caenorhabditis elegans Hypothetical
protein T20D4.8 protein.
Length = 460
Score = 29.9 bits (64), Expect = 2.6
Identities = 21/50 (42%), Positives = 25/50 (50%)
Frame = +2
Query: 575 PSKHSLSIDNGGKSVNYCTRDEENYKKQCTDVDVVNKPIDNEFSLRKQNE 724
PS L N KS N C +DE K+ D D V KPID FS + +E
Sbjct: 287 PSGKELLTPNVTKSANKCAQDE---AKRMGDSDAV-KPIDGWFSEKVTHE 332
>U80029-9|AAB37588.1| 459|Caenorhabditis elegans Hypothetical
protein T20D4.9 protein.
Length = 459
Score = 29.9 bits (64), Expect = 2.6
Identities = 21/50 (42%), Positives = 25/50 (50%)
Frame = +2
Query: 575 PSKHSLSIDNGGKSVNYCTRDEENYKKQCTDVDVVNKPIDNEFSLRKQNE 724
PS L N K+ N CT+DE K D D V KPID FS + +E
Sbjct: 286 PSGTELLTPNVTKAANKCTQDE---VKMMGDSDAV-KPIDGWFSKKVTHE 331
>Z72502-1|CAA96585.2| 430|Caenorhabditis elegans Hypothetical
protein C08B6.2 protein.
Length = 430
Score = 29.1 bits (62), Expect = 4.6
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = -2
Query: 340 IFWHVGIYLGHDFGLANWICFTDTWGSYFL-LATSYNTFFYCFKYSIACYFF 188
+F + I+ GHDFG I D + L L Y+ Y F Y I F
Sbjct: 361 VFLNAKIFFGHDFGFIQIITLLDQENFFVLHLFCFYHNIKYFFYYIIFMLLF 412
>Z22176-1|CAA80142.1| 724|Caenorhabditis elegans Hypothetical
protein ZK1098.1 protein.
Length = 724
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +2
Query: 407 DRSNTTAKEKKQEPKSQDTSGGKVLSKRKGDEELMIVNKKCKLSTELENLIRNRQEPSK 583
D TA + S T+G ++L K+K ++ NK+ ++E E IR +++ K
Sbjct: 619 DDERETAFNHYKNGTSGTTAGSEILEKKKKKKDKKKKNKRSDNNSESEGEIREKEKKKK 677
>AL132949-13|CAB70106.2| 425|Caenorhabditis elegans Hypothetical
protein Y53F4B.15 protein.
Length = 425
Score = 29.1 bits (62), Expect = 4.6
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Frame = +2
Query: 428 KEKKQEPKSQDTSGGKV--LSKRKGDEELMIVNKKCKLSTELENLI-RNRQEPSKHSLSI 598
KE+K+ S D GG V +++R G E L N + +E + ++R + + H+ +
Sbjct: 174 KERKKFVVSLDFDGGVVHEMTRRSGTEALQDKNDPV-IQRIMERVDEKHRIQEALHNSTA 232
Query: 599 DNGGKSVN----YCTRDEENYKKQCTDVDVVN 682
D + Y T D ++ +++C+D D+++
Sbjct: 233 DARWNPIGFVPRYMTEDGDHPQQECSDGDIID 264
>AF197575-1|AAF18441.1| 425|Caenorhabditis elegans ASC-1 protein.
Length = 425
Score = 29.1 bits (62), Expect = 4.6
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Frame = +2
Query: 428 KEKKQEPKSQDTSGGKV--LSKRKGDEELMIVNKKCKLSTELENLI-RNRQEPSKHSLSI 598
KE+K+ S D GG V +++R G E L N + +E + ++R + + H+ +
Sbjct: 174 KERKKFVVSLDFDGGVVHEMTRRSGTEALQDKNDPV-IQRIMERVDEKHRIQEALHNSTA 232
Query: 599 DNGGKSVN----YCTRDEENYKKQCTDVDVVN 682
D + Y T D ++ +++C+D D+++
Sbjct: 233 DARWNPIGFVPRYMTEDGDHPQQECSDGDIID 264
>AF002197-6|AAD34661.1| 446|Caenorhabditis elegans Hypothetical
protein F20H11.4 protein.
Length = 446
Score = 29.1 bits (62), Expect = 4.6
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 3/97 (3%)
Frame = +2
Query: 407 DRSNTTAKEKKQEPKSQDTSGGKVLSKRKGDEELMIVNKKCKLSTELENLIRNRQ---EP 577
++S KE+K + K KV K E+ V K+ K E +NR+ +P
Sbjct: 35 EKSRNPEKEEKSKFKDLKEEKSKVPDDGKKQEDKKEVKKEEKKKDEKNKKSKNRKSKMKP 94
Query: 578 SKHSLSIDNGGKSVNYCTRDEENYKKQCTDVDVVNKP 688
+ + N K N+ DE + KK D + P
Sbjct: 95 PPDTQELANKKKFCNWFFVDELDCKKLMRDFVALRAP 131
>U00050-6|AAM22064.1| 208|Caenorhabditis elegans Hypothetical
protein F09F7.7b protein.
Length = 208
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 302 KVMTEINPNMPENPDLLISDKPNLIPQHLNQHSPFDRSNTTAKEKKQ 442
KV T+ MPE D+L++ + L + PF+ N +E K+
Sbjct: 132 KVKTDTFVGMPEYADMLLNKMSEYDVKKLGNYQPFEMCNLEYEEVKK 178
>U00050-5|AAM22063.1| 291|Caenorhabditis elegans Hypothetical
protein F09F7.7a protein.
Length = 291
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 302 KVMTEINPNMPENPDLLISDKPNLIPQHLNQHSPFDRSNTTAKEKKQ 442
KV T+ MPE D+L++ + L + PF+ N +E K+
Sbjct: 132 KVKTDTFVGMPEYADMLLNKMSEYDVKKLGNYQPFEMCNLEYEEVKK 178
>L13200-7|AAA28189.1| 206|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 96
protein.
Length = 206
Score = 28.3 bits (60), Expect = 8.0
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Frame = +2
Query: 113 ALLKSMGDGYHSP-SGEPCAGL-PTRTKKITRNGIFKTIKESVVRGSQQKITSPCVSETN 286
AL ++ G++ P S P AG P R + R + +I +V G+ + ++P + +
Sbjct: 88 ALPANVTPGWNDPPSMLPSAGTTPNRLSNMRRRPVDPSISGNVGYGTSSQTSNPYGASAS 147
Query: 287 PIGQPKVMTEINPNMPENPDLLISDKPNLIPQHLNQHSP 403
P G P+ + P++ + PQ+ Q +P
Sbjct: 148 PYGAPQQNPQQYQEQPQSYQTYQQPQQQQ-PQYGQQQNP 185
>AF026202-1|AAZ82858.1| 755|Caenorhabditis elegans Histone
deacetylase protein 4 protein.
Length = 755
Score = 28.3 bits (60), Expect = 8.0
Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 6/132 (4%)
Frame = +2
Query: 344 DLLISDKPNL-IPQH-LNQHSPFDRSNTTAKEKKQEPKSQDTSGGKVLSKRKGDEELMIV 517
+LL S NL +PQ +H P + T+ K P+S T+ ++ R + MI
Sbjct: 11 NLLSSSNGNLSVPQTPTKEHHP---TAPTSNRKCDLPRSNSTTISQLTKDRLKN---MIA 64
Query: 518 NKKCKLSTELENLIRNRQEPS----KHSLSIDNGGKSVNYCTRDEENYKKQCTDVDVVNK 685
N+ S NL+ N + + + N VN + E Y+ + + N
Sbjct: 65 NRSKGESNSQSNLMSNSVTANGNGHDNGRKLKNSNSQVNVSSPHFEPYRLPTSLANAHNL 124
Query: 686 PIDNEFSLRKQN 721
+EF LRK N
Sbjct: 125 QQASEFQLRKVN 136
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,412,312
Number of Sequences: 27780
Number of extensions: 409251
Number of successful extensions: 1404
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1400
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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