Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_N06
         (905 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    27   0.18 
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    27   0.18 
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    27   0.18 
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    27   0.18 
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    27   0.18 
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    27   0.31 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   3.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   6.7  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   8.8  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   8.8  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   8.8  

>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 27.5 bits (58), Expect = 0.18
 Identities = 12/55 (21%), Positives = 28/55 (50%)
 Frame = +2

Query: 521 KKCKLSTELENLIRNRQEPSKHSLSIDNGGKSVNYCTRDEENYKKQCTDVDVVNK 685
           +K + +++  +  R  +E SK    I +   + NY   +  NYK+ C +++ + +
Sbjct: 57  RKYRKTSKERSRDRTERERSKEPKIISSLSNNYNYSNYNNNNYKQLCYNINYIEQ 111


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 27.5 bits (58), Expect = 0.18
 Identities = 12/55 (21%), Positives = 28/55 (50%)
 Frame = +2

Query: 521 KKCKLSTELENLIRNRQEPSKHSLSIDNGGKSVNYCTRDEENYKKQCTDVDVVNK 685
           +K + +++  +  R  +E SK    I +   + NY   +  NYK+ C +++ + +
Sbjct: 57  RKYRKTSKERSRDRTERERSKEPKIISSLSNNYNYSNYNNNNYKQLCYNINYIEQ 111


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 27.5 bits (58), Expect = 0.18
 Identities = 12/55 (21%), Positives = 28/55 (50%)
 Frame = +2

Query: 521 KKCKLSTELENLIRNRQEPSKHSLSIDNGGKSVNYCTRDEENYKKQCTDVDVVNK 685
           +K + +++  +  R  +E SK    I +   + NY   +  NYK+ C +++ + +
Sbjct: 57  RKYRKTSKERSRDRTERERSKEPKIISSLSNNYNYSNYNNNNYKQLCYNINYIEQ 111


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 27.5 bits (58), Expect = 0.18
 Identities = 12/55 (21%), Positives = 28/55 (50%)
 Frame = +2

Query: 521 KKCKLSTELENLIRNRQEPSKHSLSIDNGGKSVNYCTRDEENYKKQCTDVDVVNK 685
           +K + +++  +  R  +E SK    I +   + NY   +  NYK+ C +++ + +
Sbjct: 57  RKYRKTSKERSRDRTERERSKEPKIISSLSNNYNYSNYNNNNYKQLCYNINYIEQ 111


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 27.5 bits (58), Expect = 0.18
 Identities = 12/55 (21%), Positives = 28/55 (50%)
 Frame = +2

Query: 521 KKCKLSTELENLIRNRQEPSKHSLSIDNGGKSVNYCTRDEENYKKQCTDVDVVNK 685
           +K + +++  +  R  +E SK    I +   + NY   +  NYK+ C +++ + +
Sbjct: 57  RKYRKTSKERSRDRTERERSKEPKIISSLSNNYNYSNYNNNNYKQLCYNINYIEQ 111


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 12/55 (21%), Positives = 28/55 (50%)
 Frame = +2

Query: 521 KKCKLSTELENLIRNRQEPSKHSLSIDNGGKSVNYCTRDEENYKKQCTDVDVVNK 685
           +K + +++  +  R  +E SK    I +   + NY   +  NYK+ C +++ + +
Sbjct: 57  RKYRKTSKERSRDRTERERSKEPKIISSLSNNYNYSNYNNNNYKQLCYNINHIEQ 111


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
 Frame = +2

Query: 533 LSTELENLIRNRQEPSKHSLSIDN--------GGKSVNYCTRDEENYKKQCTDVDVVNKP 688
           L   +++L+RN +    H+ +  N          ++ N    D +N  KQ  +    N+ 
Sbjct: 406 LGANVDDLMRNTRCGRYHNQNAGNQNADNQNADNQNANNQNADNQNANKQNGNRQNDNRQ 465

Query: 689 IDNEFSLRKQNEGSQISSTQTE 754
            DN+ +  +QN+  Q  + Q +
Sbjct: 466 NDNKQNGNRQNDNKQNGNRQND 487


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 204 LRVIFFVLVGRPAHGSPDGE 145
           L+ I  +L  R  HG+PD +
Sbjct: 3   LQTIILILSARICHGNPDAK 22


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 12/54 (22%), Positives = 27/54 (50%)
 Frame = +2

Query: 635 DEENYKKQCTDVDVVNKPIDNEFSLRKQNEGSQISSTQTEPVLESVKKXWSPRK 796
           D E+YK+  +D+DV+ + ++       +++ S+    + +   E      +PRK
Sbjct: 175 DVESYKQIKSDLDVLRQSVEKSELWVYKSKASEEHGNKKKKNKEDEDDGATPRK 228


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 599 DNGGKSVNYCTRDEENY 649
           D+ GK+V+Y  + +E+Y
Sbjct: 3   DDWGKTVSYTNKKDESY 19


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 333 GMLGFISVMTLG 298
           GMLGF+SVM  G
Sbjct: 26  GMLGFVSVMGNG 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,318
Number of Sequences: 438
Number of extensions: 5092
Number of successful extensions: 18
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)