Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_N04
         (853 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1226 - 35518981-35519295,35519876-35520745                       30   2.7  

>01_06_1226 - 35518981-35519295,35519876-35520745
          Length = 394

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +2

Query: 473 RNNASCLLWTMSQ*SVSARDALD*RGPVSPQLS*KSNESPKAIEVHYSWEHAGADSAP 646
           R  A CL+W      V+A       G  +P  + K+   P  + +H  WE +G ++AP
Sbjct: 213 RRKARCLMWVSK---VAA-------GEAAPPAAGKAKAYPYVVGIHCQWEASGKEAAP 260


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,947,168
Number of Sequences: 37544
Number of extensions: 194252
Number of successful extensions: 438
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)