Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_N03
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.02 |||nuclear distribution protein NUDC |Schizosaccharo...    84   3e-17
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   1.6  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    27   3.6  
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p...    27   4.8  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   8.4  

>SPBC19F8.02 |||nuclear distribution protein NUDC
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 83.8 bits (198), Expect = 3e-17
 Identities = 40/77 (51%), Positives = 51/77 (66%)
 Frame = +1

Query: 52  WWGRLVTTDPEISTRKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTSDEQKKQEV 231
           WW  ++   P I    I PE SKLSDLD ETR  VEKMM +Q QK      +DEQK+++V
Sbjct: 92  WWSCVIKGHPSIDIGSIEPENSKLSDLDEETRATVEKMMLEQSQKR-----TDEQKRKDV 146

Query: 232 LKKFMEQHPEMDFSKCK 282
           L+ FM+QHPE+DFS  +
Sbjct: 147 LQNFMKQHPELDFSNVR 163


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +1

Query: 55   WGRLVTTDPEISTRKINPEPSKLSDLDGETRGLVE--KMMYDQRQKEMGLPTSDEQKKQE 228
            W     T+P +    +  EP+++++   +     E  K     R +   +P  +EQKK  
Sbjct: 938  WANKPVTEPPVRASSVTVEPARVTESMNKMNISEEAKKPEAPSRPRTAPIPEPEEQKKAP 997

Query: 229  VLKKFMEQ 252
            V KK  E+
Sbjct: 998  VEKKDAEK 1005


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
 Frame = +2

Query: 179 DRKKWDYLQVMNKRNKKYSRN------SWNNIQRWTSPNANSTKVLINIINLKYT*PPVT 340
           + + W+ ++ +N RN K             +I     PNA ++ + ++I+NL     P+ 
Sbjct: 159 EERNWETVRGINSRNPKPETTLTIPSLGLEDISMQVVPNAFASTLPLSILNLPAEVTPID 218

Query: 341 LYIH 352
           LY H
Sbjct: 219 LYNH 222


>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = +1

Query: 175 QRQKEMGLPTSDEQ-KKQEVLKKFMEQHPEMDFSKCKFN*SLNKYN 309
           QR K  G+P  DEQ KK     +F  Q P    +    N S N  N
Sbjct: 151 QRAKRFGIPVDDEQIKKAARAARFGIQQPLASSNNKNHNQSKNPQN 196


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 732 TCLLQLIMXTNKAIASXISXIKHFFH 655
           +CL+ L   TN  I   +   KHFFH
Sbjct: 765 SCLICLETYTNGDICRKLQACKHFFH 790


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,001,619
Number of Sequences: 5004
Number of extensions: 54269
Number of successful extensions: 136
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)