Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_N03
         (899 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81546-7|CAB04452.1|  320|Caenorhabditis elegans Hypothetical pr...   128   5e-30
AF164431-1|AAF82633.1|  320|Caenorhabditis elegans NUD-1 protein.     128   5e-30
Z98866-19|CAB11556.2|  259|Caenorhabditis elegans Hypothetical p...    33   0.21 
Z78017-2|CAD44160.1|  615|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z73976-10|CAD44151.1|  615|Caenorhabditis elegans Hypothetical p...    30   2.0  
AF003740-7|AAC48142.2|  625|Caenorhabditis elegans Hypothetical ...    30   2.6  
AL110499-4|CAD30454.1|  197|Caenorhabditis elegans Hypothetical ...    29   6.0  

>Z81546-7|CAB04452.1|  320|Caenorhabditis elegans Hypothetical
           protein F53A2.4 protein.
          Length = 320

 Score =  128 bits (309), Expect = 5e-30
 Identities = 54/77 (70%), Positives = 67/77 (87%)
 Frame = +1

Query: 52  WWGRLVTTDPEISTRKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTSDEQKKQEV 231
           WW R + +DP I+T+++ PE SKLSDLDGETR +VEKMMYDQRQKEMGLPTSDE+KK ++
Sbjct: 242 WWNRFLDSDPPINTKEVKPENSKLSDLDGETRAMVEKMMYDQRQKEMGLPTSDEKKKHDM 301

Query: 232 LKKFMEQHPEMDFSKCK 282
           L++FM+QHPEMDFS  K
Sbjct: 302 LQQFMKQHPEMDFSNAK 318


>AF164431-1|AAF82633.1|  320|Caenorhabditis elegans NUD-1 protein.
          Length = 320

 Score =  128 bits (309), Expect = 5e-30
 Identities = 54/77 (70%), Positives = 67/77 (87%)
 Frame = +1

Query: 52  WWGRLVTTDPEISTRKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTSDEQKKQEV 231
           WW R + +DP I+T+++ PE SKLSDLDGETR +VEKMMYDQRQKEMGLPTSDE+KK ++
Sbjct: 242 WWNRFLDSDPPINTKEVKPENSKLSDLDGETRAMVEKMMYDQRQKEMGLPTSDEKKKHDM 301

Query: 232 LKKFMEQHPEMDFSKCK 282
           L++FM+QHPEMDFS  K
Sbjct: 302 LQQFMKQHPEMDFSNAK 318


>Z98866-19|CAB11556.2|  259|Caenorhabditis elegans Hypothetical
           protein Y49E10.22 protein.
          Length = 259

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
 Frame = +1

Query: 79  PEISTRKIN----PEPSKLSDLDGETRGLVEKMMYDQRQKEM-GLPTSDEQKK 222
           PE+S +K +    P PSKL  LD  TR LV ++M  Q  K M G   SD +KK
Sbjct: 176 PEVSLKKSHIQKPPPPSKLESLDVLTRRLVSELM--QNDKTMNGRKLSDARKK 226


>Z78017-2|CAD44160.1|  615|Caenorhabditis elegans Hypothetical
           protein T07C12.12 protein.
          Length = 615

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 22/80 (27%), Positives = 35/80 (43%)
 Frame = +1

Query: 70  TTDPEISTRKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTSDEQKKQEVLKKFME 249
           +T  E  TR+I+P+    +D DG+     E + YD RQ       +D      +L K  +
Sbjct: 283 STSKEPETREISPDI--FNDEDGDYDFENENIEYDNRQSTSMKAKNDSVLVSSLLSKMKD 340

Query: 250 QHPEMDFSKCKFN*SLNKYN 309
              + D ++   N S  K N
Sbjct: 341 DTEDFDLNRRMTNRSPKKRN 360


>Z73976-10|CAD44151.1|  615|Caenorhabditis elegans Hypothetical
           protein T07C12.12 protein.
          Length = 615

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 22/80 (27%), Positives = 35/80 (43%)
 Frame = +1

Query: 70  TTDPEISTRKINPEPSKLSDLDGETRGLVEKMMYDQRQKEMGLPTSDEQKKQEVLKKFME 249
           +T  E  TR+I+P+    +D DG+     E + YD RQ       +D      +L K  +
Sbjct: 283 STSKEPETREISPDI--FNDEDGDYDFENENIEYDNRQSTSMKAKNDSVLVSSLLSKMKD 340

Query: 250 QHPEMDFSKCKFN*SLNKYN 309
              + D ++   N S  K N
Sbjct: 341 DTEDFDLNRRMTNRSPKKRN 360


>AF003740-7|AAC48142.2|  625|Caenorhabditis elegans Hypothetical
           protein C41D11.7 protein.
          Length = 625

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 91  TRKINPEPSKLSD-LDGETRGLVEKMMYDQRQKEMGLPTSDEQKKQEV 231
           T + NPE   L D L+      +E   +D  +KE G+P S+E+++  +
Sbjct: 27  TLEDNPESLTLQDVLESHMTDPIELNSFDSMEKEAGIPFSNEKQRTAI 74


>AL110499-4|CAD30454.1|  197|Caenorhabditis elegans Hypothetical
           protein Y62F5A.9 protein.
          Length = 197

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +1

Query: 154 VEKMMYDQRQKEMGLPTSDEQKKQEVLKKFMEQHP---EMDFSKCKFN 288
           +++    Q  K+M     DE K Q VL KFME  P   + DF +  F+
Sbjct: 51  IDEAKIHQLSKDMVSNDYDEDKVQRVLDKFMESLPADQKKDFGRLYFD 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,533,573
Number of Sequences: 27780
Number of extensions: 299962
Number of successful extensions: 767
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)