Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_N02
         (930 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    26   6.6  
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe...    26   6.6  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   6.6  

>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 122 YFQVVFPVIHNSWYKQCGSIYRL 190
           + QV   + HNS +  C +IYRL
Sbjct: 853 FAQVFIDITHNSKFNSCCNIYRL 875


>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/48 (22%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 284 EKRVYIGSSKLAILFQHTRV*NK*IWKKNSHSIPYTC-HLSKKLPSYI 424
           E   +IG+    + +   R  +K +W+  +H  P +C  ++  +PS++
Sbjct: 352 ENNFFIGTDNGIVYYCDARNLSKSVWQLQAHDGPISCLSVNPSVPSFV 399


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 428 ILYSLEVSWIDDRYMGWN 375
           +LY++E SWI  +Y+G N
Sbjct: 105 VLYNVEQSWIGYKYLGGN 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,615,232
Number of Sequences: 5004
Number of extensions: 44871
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)