Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_M24
         (947 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    23   3.5  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   6.1  

>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -1

Query: 779 VVXPRGASSTMCGNHFLPQPFCSSFNLSQTFRM 681
           ++ P G S ++C   F  QP   S +++ +  M
Sbjct: 123 LLSPGGYSGSLCDQGFAQQPMFPSMSVNVSMNM 155


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 15/62 (24%), Positives = 24/62 (38%)
 Frame = +1

Query: 118 LITQCCTFRTFTMATTKDTSTFFLEANAKEFDSVLKLYPQAIKLKAERKTKRPDELIKLD 297
           +I   CT   F     K       E+N +  D  + LY +  KLK    + +   L+ + 
Sbjct: 111 IIPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGLYERIQKLKKANPSLK--TLLAIG 168

Query: 298 NW 303
            W
Sbjct: 169 GW 170


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,061
Number of Sequences: 336
Number of extensions: 4326
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26685714
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)