Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_M24
(947 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 29 0.72
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma... 29 0.96
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa... 27 2.9
SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces... 27 3.9
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo... 27 3.9
SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12 |Schizos... 27 5.1
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 26 8.9
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 26 8.9
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 26 8.9
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 29.5 bits (63), Expect = 0.72
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 4/121 (3%)
Frame = +1
Query: 187 LEANAKEFDSV---LKLYPQAIKLKAERKTKRPDELIKLDNWYQNELPKNFKSRGKDAHM 357
LE +K+FD L+ + + ++ K E K+ + I D + +L + S KD H
Sbjct: 13 LEYRSKKFDKKSQSLEEHEKKVQQKNEELEKKAADKISRDELPEKQLAQ---SNDKDKHS 69
Query: 358 IHEELVQLMKWKQARGKFYPQLSYLIKVNTPRAVMQETKKA-FRKLPNIESAMTALSNLK 534
+ + +K K+ +GK + L N P+ ET + F++ + S
Sbjct: 70 VSNPPHKTLKSKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTS 129
Query: 535 G 537
G
Sbjct: 130 G 130
>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 29.1 bits (62), Expect = 0.96
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +1
Query: 367 ELVQLMKWKQARGKFYPQLSYLIKVNTPRAV----MQETKKAFRKLPNIESAMTALSNLK 534
E++++++ GK Y Q+ ++V T + V ++E K+AF + E+ +L NL+
Sbjct: 74 EVLKILRDFDKTGKGYLQMEDFVRVMTEKIVERDPLEEIKRAFELFDDDETGKISLRNLR 133
Query: 535 GV 540
V
Sbjct: 134 RV 135
>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 199
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Frame = +1
Query: 196 NAKEFD---SVLKLYPQAIKLKAERKTKRP 276
+ ++FD +++ P A +KAERKTKRP
Sbjct: 88 SVEQFDFLQDIVEKVPDAPPIKAERKTKRP 117
>SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 426
Score = 27.1 bits (57), Expect = 3.9
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = -1
Query: 182 KVDVSFVVAIVNVLNVQHCVISLTTGAELDAAGXTW 75
K+D S V + N+ + HC G+ D TW
Sbjct: 187 KIDDSTKVIVHNLAQIAHCSAQGKVGSGFDVGAATW 222
>SPAC637.11 |suv3||ATP-dependent RNA helicase
Suv3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 27.1 bits (57), Expect = 3.9
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Frame = +1
Query: 151 TMATTKDTSTFFLEANAKEFDSVLKLYPQAIKLKAERKTKRPD---ELIKLDN---WY 306
++A +K +STF L+ K D +L Y + ++ + + RPD +L L N WY
Sbjct: 107 SLALSKSSSTFDLQKIKKIHDCLLSEYRKYVRYQERIEETRPDLQKQLTDLKNPIEWY 164
>SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 26.6 bits (56), Expect = 5.1
Identities = 17/67 (25%), Positives = 29/67 (43%)
Frame = +1
Query: 169 DTSTFFLEANAKEFDSVLKLYPQAIKLKAERKTKRPDELIKLDNWYQNELPKNFKSRGKD 348
D + A+E V +L+ + ER+ K+ + +LD WY +P +S +D
Sbjct: 103 DIDDYRYYGRARELPGVKELFEADMSFIPERQRKQEMQKRRLDAWYFGYIPPAQESLLED 162
Query: 349 AHMIHEE 369
EE
Sbjct: 163 FEAKIEE 169
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 25.8 bits (54), Expect = 8.9
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = -3
Query: 201 CICLQKESRRVFRGSHCERSKCTTL 127
C+C+ K + +F G H +C +L
Sbjct: 344 CVCVPKATHHIFSGGHDGTIRCWSL 368
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 25.8 bits (54), Expect = 8.9
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -3
Query: 213 IEFFCICLQKESRRVFRGSHCERSKCTTLRN*FDYG 106
+EF C C S+ SH R C +R+ FD G
Sbjct: 173 LEFVCSCRLPASKYDHPRSHYIRRICEIIRDAFDLG 208
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 25.8 bits (54), Expect = 8.9
Identities = 10/30 (33%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Frame = -3
Query: 819 LFSLITVVVS--PIXCCASQRGQLYHVWKP 736
L +IT+V+ P+ +++ G+LY++W+P
Sbjct: 67 LGDMITLVIKDIPVTWLSNEGGKLYNLWEP 96
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,401,751
Number of Sequences: 5004
Number of extensions: 69284
Number of successful extensions: 191
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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