Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_M24
         (947 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-12|AAK29854.2|  237|Caenorhabditis elegans Hypothetical p...    31   0.91 
AF143152-1|AAD37863.1|  237|Caenorhabditis elegans putative NADH...    31   0.91 
AF100307-5|AAC68933.2|  316|Caenorhabditis elegans Hypothetical ...    28   8.5  

>U00036-12|AAK29854.2|  237|Caenorhabditis elegans Hypothetical
           protein R151.6 protein.
          Length = 237

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 23/70 (32%), Positives = 35/70 (50%)
 Frame = -3

Query: 357 HVRIFTPRFEILGKFILIPIVQFYELIWSFCFTFSF*FNRLRIQL*YTIEFFCICLQKES 178
           H+   TP        ++I   QF+ LI SFCF  SF F+ L   + +T   +C+ L++ S
Sbjct: 30  HLEFVTPFHLYFNWELIIRKYQFWRLITSFCFFGSFGFSFL-FNMIFTYR-YCMMLEEGS 87

Query: 177 RRVFRGSHCE 148
              FRG   +
Sbjct: 88  ---FRGRRAD 94


>AF143152-1|AAD37863.1|  237|Caenorhabditis elegans putative NADH
           oxidoreductase complexI subunit protein.
          Length = 237

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 23/70 (32%), Positives = 35/70 (50%)
 Frame = -3

Query: 357 HVRIFTPRFEILGKFILIPIVQFYELIWSFCFTFSF*FNRLRIQL*YTIEFFCICLQKES 178
           H+   TP        ++I   QF+ LI SFCF  SF F+ L   + +T   +C+ L++ S
Sbjct: 30  HLEFVTPFHLYFNWELIIRKYQFWRLITSFCFFGSFGFSFL-FNMIFTYR-YCMMLEEGS 87

Query: 177 RRVFRGSHCE 148
              FRG   +
Sbjct: 88  ---FRGRRAD 94


>AF100307-5|AAC68933.2|  316|Caenorhabditis elegans Hypothetical
           protein T12B5.8 protein.
          Length = 316

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 277 DELIKLDNWYQNELPKNFKSRGKDAHMIHEELVQLMKWKQA 399
           DE++ + +W+ ++  K  + R  D+    E + QL +WK A
Sbjct: 163 DEVLTILSWFDSKELKTIELRWMDSIDRFERITQLEQWKNA 203


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,213,450
Number of Sequences: 27780
Number of extensions: 402980
Number of successful extensions: 1062
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2454664212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)