Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_M23
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    75   1e-14
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    29   0.67 
SPBC1105.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   3.6  
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   4.7  

>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 58/184 (31%), Positives = 86/184 (46%), Gaps = 31/184 (16%)
 Frame = +3

Query: 348 VHYKFKSALDYDTVTFDG-LHISVGDLKAAISQQKRIGKTSDFDLEITNAQTKEIYVDDN 524
           ++YKFKS  D   +TFDG + +SV D+K  I  QK++G   DFDL + NA + E Y DD 
Sbjct: 5   IYYKFKSQKDPSRITFDGTIGMSVFDVKREIIMQKKLGNGLDFDLLLYNANSNEEYDDDT 64

Query: 525 ALIPKNTSLLVARVP------------LSQQPKKQWEGSNSNSAP----HKDVTVNKGLA 656
            +IP++TS++V RVP            +S  PK     S+S   P     K   +  G +
Sbjct: 65  FIIPRSTSVIVRRVPAQKSGKGTAARYVSGAPKTTGARSDSVKRPVPMLQKKAPITSGES 124

Query: 657 DLSRMEGSEQDKINAMISQSTFDYDPSNYQKIRGQ------NQRGAV--------PSNYI 794
           ++++   S +D     + Q + D       K+         NQR           P  YI
Sbjct: 125 NINKSPSSSEDAAIQQMFQVSSDQWRETQDKMASATPIYKPNQRRIAASVPDKPPPPGYI 184

Query: 795 CYKC 806
           CY+C
Sbjct: 185 CYRC 188


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
 Frame = +3

Query: 393 FDGLHISVGDLKAAISQQKRIGKTSDF-DLEITNAQTKEIYVDDNALIPKNTSLLVARVP 569
           +DGL   VG   A ++   RI K ++F   +    Q  E+ V  N  + ++   L    P
Sbjct: 301 YDGL---VGKAMAFLTSVIRIRKHAEFFQQDQVLQQFIELVVLPNICLRESDEELFEDDP 357

Query: 570 LSQQPKKQWEGSNSNSAPHKDVTVNKGLADL--SRMEGSEQDKINAMISQSTFDYDPS 737
           L +  ++  EGSNS+S     + + +GL D    ++       INA + Q  F  +PS
Sbjct: 358 L-EYVRRDLEGSNSDSRARSAIVLVRGLLDHFDQKITSVVSTHINANLQQ--FSTNPS 412


>SPBC1105.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 142

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -3

Query: 621 ELNYYLSLPTASLVVEKVELWQPGEMYSLESKHCHQHISLW 499
           + ++Y +LP+  L++ + E+ +    +    K  HQH S W
Sbjct: 35  QTHHYSTLPSCDLLLIRGEVKENARCFLHNPKISHQHHSFW 75


>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 19/75 (25%), Positives = 32/75 (42%)
 Frame = +3

Query: 489 NAQTKEIYVDDNALIPKNTSLLVARVPLSQQPKKQWEGSNSNSAPHKDVTVNKGLADLSR 668
           N Q  E   +DN  + +NT  + A   +S +  +   G  S  +P     V K   D S 
Sbjct: 44  NNQVNEPTGNDNTQVVENTEDISASNVVSAEGAEASTGDASTQSPETSENVVKNSVDESV 103

Query: 669 MEGSEQDKINAMISQ 713
            E  E++ +  + S+
Sbjct: 104 AEKPEKEDLAVIESE 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,583,516
Number of Sequences: 5004
Number of extensions: 76833
Number of successful extensions: 208
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)