Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_M23
         (884 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0106 + 14842748-14843085,14843122-14843250,14844145-148442...    85   7e-17
03_05_0559 - 25610474-25610951,25611149-25611890,25612355-256127...    50   2e-06
01_01_1052 + 8297105-8297422,8298978-8299310,8299820-8301010           30   2.8  
11_06_0632 + 25674807-25675477,25676472-25677861,25677948-256780...    29   3.8  
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968...    29   3.8  
03_02_0905 - 12292322-12293073,12293288-12293471                       28   8.7  

>10_08_0106 +
           14842748-14843085,14843122-14843250,14844145-14844211,
           14847177-14847324,14847998-14848097,14848306-14848384,
           14848527-14848687,14848829-14848908,14849319-14849475,
           14849575-14849723,14849909-14850076,14850426-14850719,
           14851002-14851046,14851213-14851462,14851707-14851835,
           14852799-14853039,14853977-14854642
          Length = 1066

 Score = 85.0 bits (201), Expect = 7e-17
 Identities = 38/71 (53%), Positives = 52/71 (73%)
 Frame = +3

Query: 357 KFKSALDYDTVTFDGLHISVGDLKAAISQQKRIGKTSDFDLEITNAQTKEIYVDDNALIP 536
           KFKSA DYD++  +G  ISV +LK  I + K +G+ +DFDL I+NAQT E Y D+  +IP
Sbjct: 178 KFKSARDYDSIPIEGQFISVANLKERIFESKHLGRGTDFDLMISNAQTDEEYADEATMIP 237

Query: 537 KNTSLLVARVP 569
           KNTS+L+ R+P
Sbjct: 238 KNTSVLIRRIP 248


>03_05_0559 -
           25610474-25610951,25611149-25611890,25612355-25612744,
           25613041-25613099,25613186-25613326,25613449-25613545,
           25614999-25615185
          Length = 697

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
 Frame = +3

Query: 348 VHYKFKSALDYDTVTFDGLHISVGDLKAAI--SQQKRIGKTSDF----DLEITNAQTKEI 509
           V+YK+KS+ +  +V      +SV +LK  I  S +   G+T       D+ ++NAQT E 
Sbjct: 4   VYYKYKSSKETISVPVPHSFVSVSELKQLILTSDKHGRGRTRGRGPREDIVLSNAQTGEE 63

Query: 510 YVDDNALIPKNTSLLVARVPLSQQPK 587
           ++D+NA+IP+N+++LV R    Q  K
Sbjct: 64  FLDENAMIPQNSTVLVRRTSGQQSEK 89


>01_01_1052 + 8297105-8297422,8298978-8299310,8299820-8301010
          Length = 613

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = +3

Query: 510 YVDDNALIPKNTSLLVARVPLSQQPKKQWEGSNSN--SAPHKDVTVNKGLADLSRME-GS 680
           ++ +N+LIP  ++     VP S   ++Q   SNS   S+    +  NK L +  R   G 
Sbjct: 389 FLKNNSLIPSGSTSRPVHVPSSAGNERQDTFSNSQVLSSVEDILAANKALVEKMRAALGM 448

Query: 681 EQDKINA 701
           +QD  NA
Sbjct: 449 DQDMFNA 455


>11_06_0632 +
           25674807-25675477,25676472-25677861,25677948-25678083,
           25678185-25678282,25678470-25678535,25678699-25678827,
           25679570-25679746,25680576-25680614
          Length = 901

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
 Frame = +3

Query: 435 ISQQKRIGKTSDFDLEITNAQTKEIYVDDNALIPKNTSLLVARVPLSQQPKKQWEG---- 602
           +  Q      S+ D+ +T ++        NA  P  +  L+ + PL  +    ++G    
Sbjct: 384 VGDQSPRSTESEDDIWLTVSEIPLFTQPTNAPPPSRSPPLLKQRPLQAKANGNYDGYVRQ 443

Query: 603 SNSNSAPHKDVTVNKGLADLSRMEGSEQDK 692
           SN N   ++D+     ++ L  MEG  +DK
Sbjct: 444 SNQNHNQYRDMPDQAEVSSLDEMEGFAKDK 473


>10_08_0043 - 14390398-14391531,14391850-14393691,14393800-14396825,
            14397510-14397609
          Length = 2033

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 7/132 (5%)
 Frame = +3

Query: 339  EMSVHYKFKSALDYDTV-------TFDGLHISVGDLKAAISQQKRIGKTSDFDLEITNAQ 497
            EM +H   K AL  D           +G+H S+ +  + +  +    +    DL+I N +
Sbjct: 843  EMGLHIGEKEALQRDFACQKEEKQNLEGIHHSLAEEMSTLKSRSAANQKLIEDLQIMNLK 902

Query: 498  TKEIYVDDNALIPKNTSLLVARVPLSQQPKKQWEGSNSNSAPHKDVTVNKGLADLSRMEG 677
             KE+    N +     S  V  V    +     E S S++    D ++ + +  L   EG
Sbjct: 903  LKEVCA-KNEVEKALLSEKVQEVEKLSEEFSLMENSLSDANAEMD-SLREKIKVLETSEG 960

Query: 678  SEQDKINAMISQ 713
            S +D I++ +S+
Sbjct: 961  SLKDVISSHVSE 972


>03_02_0905 - 12292322-12293073,12293288-12293471
          Length = 311

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +3

Query: 342 MSVHYKFKSALDYDTVTFDGLHISVGDLKAAISQQKRIG 458
           M+V Y+++S +D  +V      +SVG+LK  I+   R G
Sbjct: 1   MAVFYRYRSRVDTFSVPVPEPFVSVGELKRLITATARHG 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,466,139
Number of Sequences: 37544
Number of extensions: 423919
Number of successful extensions: 846
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)