Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_M23
(884 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC063524-1|AAH63524.1| 919|Homo sapiens RBBP6 protein protein. 133 7e-31
AB112075-1|BAC77637.1| 1758|Homo sapiens retinoblastoma binding ... 133 7e-31
AB112074-1|BAC77636.1| 1792|Homo sapiens retinoblastoma binding ... 133 7e-31
BC139830-1|AAI39831.1| 118|Homo sapiens retinoblastoma binding ... 105 3e-22
BC118667-1|AAI18668.1| 118|Homo sapiens retinoblastoma binding ... 105 3e-22
BC114354-1|AAI14355.1| 118|Homo sapiens retinoblastoma binding ... 105 3e-22
BC114353-1|AAI14354.1| 118|Homo sapiens retinoblastoma binding ... 105 3e-22
BC101142-1|AAI01143.1| 118|Homo sapiens retinoblastoma binding ... 105 3e-22
BC101141-1|AAI01142.1| 118|Homo sapiens retinoblastoma binding ... 105 3e-22
BC101140-1|AAI01141.1| 118|Homo sapiens retinoblastoma binding ... 105 3e-22
BC101139-1|AAI01140.1| 118|Homo sapiens retinoblastoma binding ... 105 3e-22
BC029352-1|AAH29352.1| 118|Homo sapiens retinoblastoma binding ... 105 3e-22
BC051317-1|AAH51317.1| 71|Homo sapiens RBBP6 protein protein. 73 1e-12
AF063596-1|AAG43155.1| 71|Homo sapiens brain my038 protein pro... 73 1e-12
AY072922-1|AAL68925.1| 1625|Homo sapiens p53-associated cellular... 33 1.0
U84664-1|AAC51185.1| 1411|Homo sapiens putative nucleolar traffi... 31 7.3
U79659-1|AAB40722.1| 1411|Homo sapiens Treacher Collins syndrome... 31 7.3
U76366-1|AAC51181.1| 1411|Homo sapiens TCOF1 protein. 31 7.3
U40847-1|AAC50903.1| 1411|Homo sapiens TCOF1 protein. 31 7.3
BC041961-1|AAH41961.1| 473|Homo sapiens C8orf34 protein protein. 31 7.3
BC016144-1|AAH16144.1| 1414|Homo sapiens Unknown (protein for IM... 31 7.3
AY460334-1|AAR87774.1| 1488|Homo sapiens treacle major isoform p... 31 7.3
AB056652-1|BAB64433.1| 427|Homo sapiens vest-1 protein. 31 7.3
>BC063524-1|AAH63524.1| 919|Homo sapiens RBBP6 protein protein.
Length = 919
Score = 133 bits (322), Expect = 7e-31
Identities = 76/166 (45%), Positives = 104/166 (62%), Gaps = 13/166 (7%)
Frame = +3
Query: 348 VHYKFKSALDYDTVTFDGLHISVGDLKAAISQQKRIGKTSDFDLEITNAQTKEIYVDDNA 527
VHYKF S L+YDTVTFDGLHIS+ DLK I ++++ K +D DL+ITNAQTKE Y DDNA
Sbjct: 4 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKL-KAADCDLQITNAQTKEEYTDDNA 62
Query: 528 LIPKNTSLLVARVPLS--QQPKKQW-----EGSNSNSAPHKDVTVNKGLADLSR------ 668
LIPKN+S++V R+P+ + K + E + + + D + + LA L++
Sbjct: 63 LIPKNSSVIVRRIPIGGVKSTSKTYVISRTEPAMATTKAIDDSSASISLAQLTKTANLAE 122
Query: 669 MEGSEQDKINAMISQSTFDYDPSNYQKIRGQNQRGAVPSNYICYKC 806
SE+DKI AM+SQS +YDP NY K G P +Y C++C
Sbjct: 123 ANASEEDKIKAMMSQSGHEYDPINYMK----KPLGPPPPSYTCFRC 164
>AB112075-1|BAC77637.1| 1758|Homo sapiens retinoblastoma binding
protein 6 isoform 2 protein.
Length = 1758
Score = 133 bits (322), Expect = 7e-31
Identities = 76/166 (45%), Positives = 104/166 (62%), Gaps = 13/166 (7%)
Frame = +3
Query: 348 VHYKFKSALDYDTVTFDGLHISVGDLKAAISQQKRIGKTSDFDLEITNAQTKEIYVDDNA 527
VHYKF S L+YDTVTFDGLHIS+ DLK I ++++ K +D DL+ITNAQTKE Y DDNA
Sbjct: 4 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKL-KAADCDLQITNAQTKEEYTDDNA 62
Query: 528 LIPKNTSLLVARVPLS--QQPKKQW-----EGSNSNSAPHKDVTVNKGLADLSR------ 668
LIPKN+S++V R+P+ + K + E + + + D + + LA L++
Sbjct: 63 LIPKNSSVIVRRIPIGGVKSTSKTYVISRTEPAMATTKAIDDSSASISLAQLTKTANLAE 122
Query: 669 MEGSEQDKINAMISQSTFDYDPSNYQKIRGQNQRGAVPSNYICYKC 806
SE+DKI AM+SQS +YDP NY K G P +Y C++C
Sbjct: 123 ANASEEDKIKAMMSQSGHEYDPINYMK----KPLGPPPPSYTCFRC 164
>AB112074-1|BAC77636.1| 1792|Homo sapiens retinoblastoma binding
protein 6 isoform 1 protein.
Length = 1792
Score = 133 bits (322), Expect = 7e-31
Identities = 76/166 (45%), Positives = 104/166 (62%), Gaps = 13/166 (7%)
Frame = +3
Query: 348 VHYKFKSALDYDTVTFDGLHISVGDLKAAISQQKRIGKTSDFDLEITNAQTKEIYVDDNA 527
VHYKF S L+YDTVTFDGLHIS+ DLK I ++++ K +D DL+ITNAQTKE Y DDNA
Sbjct: 4 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKL-KAADCDLQITNAQTKEEYTDDNA 62
Query: 528 LIPKNTSLLVARVPLS--QQPKKQW-----EGSNSNSAPHKDVTVNKGLADLSR------ 668
LIPKN+S++V R+P+ + K + E + + + D + + LA L++
Sbjct: 63 LIPKNSSVIVRRIPIGGVKSTSKTYVISRTEPAMATTKAIDDSSASISLAQLTKTANLAE 122
Query: 669 MEGSEQDKINAMISQSTFDYDPSNYQKIRGQNQRGAVPSNYICYKC 806
SE+DKI AM+SQS +YDP NY K G P +Y C++C
Sbjct: 123 ANASEEDKIKAMMSQSGHEYDPINYMK----KPLGPPPPSYTCFRC 164
>BC139830-1|AAI39831.1| 118|Homo sapiens retinoblastoma binding
protein 6 protein.
Length = 118
Score = 105 bits (251), Expect = 3e-22
Identities = 49/75 (65%), Positives = 62/75 (82%)
Frame = +3
Query: 348 VHYKFKSALDYDTVTFDGLHISVGDLKAAISQQKRIGKTSDFDLEITNAQTKEIYVDDNA 527
VHYKF S L+YDTVTFDGLHIS+ DLK I ++++ K +D DL+ITNAQTKE Y DDNA
Sbjct: 4 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKL-KAADCDLQITNAQTKEEYTDDNA 62
Query: 528 LIPKNTSLLVARVPL 572
LIPKN+S++V R+P+
Sbjct: 63 LIPKNSSVIVRRIPI 77
>BC118667-1|AAI18668.1| 118|Homo sapiens retinoblastoma binding
protein 6 protein.
Length = 118
Score = 105 bits (251), Expect = 3e-22
Identities = 49/75 (65%), Positives = 62/75 (82%)
Frame = +3
Query: 348 VHYKFKSALDYDTVTFDGLHISVGDLKAAISQQKRIGKTSDFDLEITNAQTKEIYVDDNA 527
VHYKF S L+YDTVTFDGLHIS+ DLK I ++++ K +D DL+ITNAQTKE Y DDNA
Sbjct: 4 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKL-KAADCDLQITNAQTKEEYTDDNA 62
Query: 528 LIPKNTSLLVARVPL 572
LIPKN+S++V R+P+
Sbjct: 63 LIPKNSSVIVRRIPI 77
>BC114354-1|AAI14355.1| 118|Homo sapiens retinoblastoma binding
protein 6 protein.
Length = 118
Score = 105 bits (251), Expect = 3e-22
Identities = 49/75 (65%), Positives = 62/75 (82%)
Frame = +3
Query: 348 VHYKFKSALDYDTVTFDGLHISVGDLKAAISQQKRIGKTSDFDLEITNAQTKEIYVDDNA 527
VHYKF S L+YDTVTFDGLHIS+ DLK I ++++ K +D DL+ITNAQTKE Y DDNA
Sbjct: 4 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKL-KAADCDLQITNAQTKEEYTDDNA 62
Query: 528 LIPKNTSLLVARVPL 572
LIPKN+S++V R+P+
Sbjct: 63 LIPKNSSVIVRRIPI 77
>BC114353-1|AAI14354.1| 118|Homo sapiens retinoblastoma binding
protein 6 protein.
Length = 118
Score = 105 bits (251), Expect = 3e-22
Identities = 49/75 (65%), Positives = 62/75 (82%)
Frame = +3
Query: 348 VHYKFKSALDYDTVTFDGLHISVGDLKAAISQQKRIGKTSDFDLEITNAQTKEIYVDDNA 527
VHYKF S L+YDTVTFDGLHIS+ DLK I ++++ K +D DL+ITNAQTKE Y DDNA
Sbjct: 4 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKL-KAADCDLQITNAQTKEEYTDDNA 62
Query: 528 LIPKNTSLLVARVPL 572
LIPKN+S++V R+P+
Sbjct: 63 LIPKNSSVIVRRIPI 77
>BC101142-1|AAI01143.1| 118|Homo sapiens retinoblastoma binding
protein 6 protein.
Length = 118
Score = 105 bits (251), Expect = 3e-22
Identities = 49/75 (65%), Positives = 62/75 (82%)
Frame = +3
Query: 348 VHYKFKSALDYDTVTFDGLHISVGDLKAAISQQKRIGKTSDFDLEITNAQTKEIYVDDNA 527
VHYKF S L+YDTVTFDGLHIS+ DLK I ++++ K +D DL+ITNAQTKE Y DDNA
Sbjct: 4 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKL-KAADCDLQITNAQTKEEYTDDNA 62
Query: 528 LIPKNTSLLVARVPL 572
LIPKN+S++V R+P+
Sbjct: 63 LIPKNSSVIVRRIPI 77
>BC101141-1|AAI01142.1| 118|Homo sapiens retinoblastoma binding
protein 6 protein.
Length = 118
Score = 105 bits (251), Expect = 3e-22
Identities = 49/75 (65%), Positives = 62/75 (82%)
Frame = +3
Query: 348 VHYKFKSALDYDTVTFDGLHISVGDLKAAISQQKRIGKTSDFDLEITNAQTKEIYVDDNA 527
VHYKF S L+YDTVTFDGLHIS+ DLK I ++++ K +D DL+ITNAQTKE Y DDNA
Sbjct: 4 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKL-KAADCDLQITNAQTKEEYTDDNA 62
Query: 528 LIPKNTSLLVARVPL 572
LIPKN+S++V R+P+
Sbjct: 63 LIPKNSSVIVRRIPI 77
>BC101140-1|AAI01141.1| 118|Homo sapiens retinoblastoma binding
protein 6 protein.
Length = 118
Score = 105 bits (251), Expect = 3e-22
Identities = 49/75 (65%), Positives = 62/75 (82%)
Frame = +3
Query: 348 VHYKFKSALDYDTVTFDGLHISVGDLKAAISQQKRIGKTSDFDLEITNAQTKEIYVDDNA 527
VHYKF S L+YDTVTFDGLHIS+ DLK I ++++ K +D DL+ITNAQTKE Y DDNA
Sbjct: 4 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKL-KAADCDLQITNAQTKEEYTDDNA 62
Query: 528 LIPKNTSLLVARVPL 572
LIPKN+S++V R+P+
Sbjct: 63 LIPKNSSVIVRRIPI 77
>BC101139-1|AAI01140.1| 118|Homo sapiens retinoblastoma binding
protein 6 protein.
Length = 118
Score = 105 bits (251), Expect = 3e-22
Identities = 49/75 (65%), Positives = 62/75 (82%)
Frame = +3
Query: 348 VHYKFKSALDYDTVTFDGLHISVGDLKAAISQQKRIGKTSDFDLEITNAQTKEIYVDDNA 527
VHYKF S L+YDTVTFDGLHIS+ DLK I ++++ K +D DL+ITNAQTKE Y DDNA
Sbjct: 4 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKL-KAADCDLQITNAQTKEEYTDDNA 62
Query: 528 LIPKNTSLLVARVPL 572
LIPKN+S++V R+P+
Sbjct: 63 LIPKNSSVIVRRIPI 77
>BC029352-1|AAH29352.1| 118|Homo sapiens retinoblastoma binding
protein 6 protein.
Length = 118
Score = 105 bits (251), Expect = 3e-22
Identities = 49/75 (65%), Positives = 62/75 (82%)
Frame = +3
Query: 348 VHYKFKSALDYDTVTFDGLHISVGDLKAAISQQKRIGKTSDFDLEITNAQTKEIYVDDNA 527
VHYKF S L+YDTVTFDGLHIS+ DLK I ++++ K +D DL+ITNAQTKE Y DDNA
Sbjct: 4 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKL-KAADCDLQITNAQTKEEYTDDNA 62
Query: 528 LIPKNTSLLVARVPL 572
LIPKN+S++V R+P+
Sbjct: 63 LIPKNSSVIVRRIPI 77
>BC051317-1|AAH51317.1| 71|Homo sapiens RBBP6 protein protein.
Length = 71
Score = 72.9 bits (171), Expect = 1e-12
Identities = 35/53 (66%), Positives = 43/53 (81%)
Frame = +3
Query: 348 VHYKFKSALDYDTVTFDGLHISVGDLKAAISQQKRIGKTSDFDLEITNAQTKE 506
VHYKF S L+YDTVTFDGLHIS+ DLK I ++++ K +D DL+ITNAQTKE
Sbjct: 4 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKL-KAADCDLQITNAQTKE 55
>AF063596-1|AAG43155.1| 71|Homo sapiens brain my038 protein
protein.
Length = 71
Score = 72.9 bits (171), Expect = 1e-12
Identities = 35/53 (66%), Positives = 43/53 (81%)
Frame = +3
Query: 348 VHYKFKSALDYDTVTFDGLHISVGDLKAAISQQKRIGKTSDFDLEITNAQTKE 506
VHYKF S L+YDTVTFDGLHIS+ DLK I ++++ K +D DL+ITNAQTKE
Sbjct: 4 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKL-KAADCDLQITNAQTKE 55
>AY072922-1|AAL68925.1| 1625|Homo sapiens p53-associated cellular
protein PACT protein.
Length = 1625
Score = 33.5 bits (73), Expect = 1.0
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 702 MISQSTFDYDPSNYQKIRGQNQRGAVPSNYICYKC 806
M+SQS +YDP NY K G P +Y C++C
Sbjct: 1 MMSQSGHEYDPINYMK----KPLGPPPPSYTCFRC 31
>U84664-1|AAC51185.1| 1411|Homo sapiens putative nucleolar trafficking
phosphoprotein protein.
Length = 1411
Score = 30.7 bits (66), Expect = 7.3
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = +3
Query: 558 ARVPLSQQPKK--QWEGSNSNSAPHKDVTVNKGLADLSRMEGSEQDK--INAMISQSTFD 725
AR P S++ KK EG ++ +P K T +KG A + G ++K ++ SQ D
Sbjct: 1279 ARTPRSKKKKKLGAGEGGEASVSPEKTSTTSKGKAKRDKASGDVKEKKGKGSLGSQGAKD 1338
Query: 726 YDPSNYQKIRGQNQRG 773
QK G + G
Sbjct: 1339 EPEEELQKGMGTVEGG 1354
>U79659-1|AAB40722.1| 1411|Homo sapiens Treacher Collins syndrome
protein.
Length = 1411
Score = 30.7 bits (66), Expect = 7.3
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = +3
Query: 558 ARVPLSQQPKK--QWEGSNSNSAPHKDVTVNKGLADLSRMEGSEQDK--INAMISQSTFD 725
AR P S++ KK EG ++ +P K T +KG A + G ++K ++ SQ D
Sbjct: 1279 ARTPRSKKKKKLGAGEGGEASVSPEKTSTTSKGQAKRDKASGDVKEKKGKGSLGSQGAKD 1338
Query: 726 YDPSNYQKIRGQNQRG 773
QK G + G
Sbjct: 1339 EPEEELQKGMGTVEGG 1354
>U76366-1|AAC51181.1| 1411|Homo sapiens TCOF1 protein.
Length = 1411
Score = 30.7 bits (66), Expect = 7.3
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = +3
Query: 558 ARVPLSQQPKK--QWEGSNSNSAPHKDVTVNKGLADLSRMEGSEQDK--INAMISQSTFD 725
AR P S++ KK EG ++ +P K T +KG A + G ++K ++ SQ D
Sbjct: 1279 ARTPRSKKKKKLGAGEGGEASVSPEKTSTTSKGKAKRDKASGDVKEKKGKGSLGSQGAKD 1338
Query: 726 YDPSNYQKIRGQNQRG 773
QK G + G
Sbjct: 1339 EPEEELQKGMGTVEGG 1354
>U40847-1|AAC50903.1| 1411|Homo sapiens TCOF1 protein.
Length = 1411
Score = 30.7 bits (66), Expect = 7.3
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = +3
Query: 558 ARVPLSQQPKK--QWEGSNSNSAPHKDVTVNKGLADLSRMEGSEQDK--INAMISQSTFD 725
AR P S++ KK EG ++ +P K T +KG A + G ++K ++ SQ D
Sbjct: 1279 ARTPRSKKKKKLGAGEGGEASVSPEKTSTTSKGKAKRDKASGDVKEKKGKGSLGSQGAKD 1338
Query: 726 YDPSNYQKIRGQNQRG 773
QK G + G
Sbjct: 1339 EPEEELQKGMGTVEGG 1354
>BC041961-1|AAH41961.1| 473|Homo sapiens C8orf34 protein protein.
Length = 473
Score = 30.7 bits (66), Expect = 7.3
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +3
Query: 567 PLSQQPKKQWEGSNSNSAPHKDVTVNKGLADLSRMEGSEQDKINAMISQSTFD 725
P+ + QWE +S S+P + + L + + + + AM+SQ +F+
Sbjct: 206 PIPRSKNDQWESEDSGSSPAGSLKMEPKNKGLKQQQQQHKKLLAAMLSQDSFE 258
>BC016144-1|AAH16144.1| 1414|Homo sapiens Unknown (protein for
IMAGE:3921754) protein.
Length = 1414
Score = 30.7 bits (66), Expect = 7.3
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = +3
Query: 558 ARVPLSQQPKK--QWEGSNSNSAPHKDVTVNKGLADLSRMEGSEQDK--INAMISQSTFD 725
AR P S++ KK EG ++ +P K T +KG A + G ++K ++ SQ D
Sbjct: 1318 ARTPRSKKKKKLGAGEGGEASVSPEKTSTTSKGKAKRDKASGDVKEKKGKGSLGSQGAKD 1377
Query: 726 YDPSNYQKIRGQNQRG 773
QK G + G
Sbjct: 1378 EPEEELQKGMGTVEGG 1393
>AY460334-1|AAR87774.1| 1488|Homo sapiens treacle major isoform
protein.
Length = 1488
Score = 30.7 bits (66), Expect = 7.3
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = +3
Query: 558 ARVPLSQQPKK--QWEGSNSNSAPHKDVTVNKGLADLSRMEGSEQDK--INAMISQSTFD 725
AR P S++ KK EG ++ +P K T +KG A + G ++K ++ SQ D
Sbjct: 1356 ARTPRSKKKKKLGAGEGGEASVSPEKTSTTSKGKAKRDKASGDVKEKKGKGSLGSQGAKD 1415
Query: 726 YDPSNYQKIRGQNQRG 773
QK G + G
Sbjct: 1416 EPEEELQKGMGTVEGG 1431
>AB056652-1|BAB64433.1| 427|Homo sapiens vest-1 protein.
Length = 427
Score = 30.7 bits (66), Expect = 7.3
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +3
Query: 567 PLSQQPKKQWEGSNSNSAPHKDVTVNKGLADLSRMEGSEQDKINAMISQSTFD 725
P+ + QWE +S S+P + + L + + + + AM+SQ +F+
Sbjct: 181 PIPRSKNDQWESEDSGSSPAGSLKMEPKNKGLKQQQQQHKKLLAAMLSQDSFE 233
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,474,580
Number of Sequences: 237096
Number of extensions: 2510123
Number of successful extensions: 4649
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 4451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4628
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11326166088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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