Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_M23
         (884 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   1.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.6  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   6.5  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   8.6  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    22   8.6  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 672 EGSEQDKINAMISQSTFDYDPSNY 743
           + S++++++A  S  TFD  P NY
Sbjct: 41  DDSDEEELSARPSFKTFDKGPKNY 64


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -3

Query: 600  LPTASLVVEKVELWQPGEMYSLESKHCHQHISLWFEH**FLNQSPKFCQ 454
            LP  +L+  +++L  PG++ SL + H  Q  +++ +     NQS +  Q
Sbjct: 1015 LPGKTLLASQIKLVSPGQIKSLLTGHGLQGQTIFIKQSPSSNQSQQIQQ 1063


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 515 NIYLFGLSISDF*IKVRSFANAFLL 441
           N YLF L+ISD  + V    N   L
Sbjct: 76  NYYLFSLAISDLILLVLGLPNELSL 100


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 679 LPSMRDRSASPLLTVTSLCGAELLFEPSHC 590
           LP+ R  S SPLL+     G +LL +   C
Sbjct: 48  LPAPRINSKSPLLSCACPDGLKLLSDGLMC 77


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 679 LPSMRDRSASPLLTVTSLCGAELLFEPSHC 590
           LP+ R  S SPLL+     G +LL +   C
Sbjct: 48  LPAPRINSKSPLLSCACPDGLKLLSDGLMC 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,531
Number of Sequences: 438
Number of extensions: 4952
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)