Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_M22
         (908 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     28   1.6  
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    27   2.8  
SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr 1|||M...    27   4.9  
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    26   6.4  
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe...    26   8.5  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    26   8.5  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    26   8.5  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   8.5  

>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +3

Query: 234 NKKTSFGSTLLDCIQSGVENLDSGVGIYAPDAESYSVFAELFDPII 371
           N+  S+ +      Q  + +      IY PD   Y ++A LF PI+
Sbjct: 479 NEALSYSNNAFSKSQEALFHPSMVTTIYFPDESKYGIYAPLFAPIL 524


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 259 VDPNEVFLFFRLSNTXPGKVLLQQRLRVG 173
           VDP   F FF +SN   G V+  +RL++G
Sbjct: 365 VDPVSAFRFFEMSNIH-GLVIRNRRLKIG 392


>SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +2

Query: 122 DAATLEKLEAGFSKLQRSDS--KSLLKKYLTRXSIRQPEEQED 244
           D+ ++  +++ F +L+R +     +LKKY  +  +  PEE  D
Sbjct: 49  DSHSMATIKSHFERLKRDEQLLNGVLKKYDAKQEVLSPEELRD 91


>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 63  PRQSVLDGCSTCQKSLQQWSTPQPSRNWRLVSASSRD 173
           PR+S ++ C  C++ +      QP  NW +    SR+
Sbjct: 54  PRESTVNHCRECERYM------QPPNNWMIAPLESRE 84


>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 366 IIEDYHNGFKKTDKHPPKNW 425
           I++  ++ FK + KH P+NW
Sbjct: 304 IVQHKNDIFKSSQKHQPRNW 323


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -2

Query: 277 WIQSRRVDPNEVFLFFRLSNTXP--GKVLLQQRLRVGSLELAETSLQFLEGCGVDH 116
           WI+        +F  FR SN+    GK+ ++   R   L + E +L+ ++GC  DH
Sbjct: 182 WIKMCEYQERLLFDEFRRSNSDDIKGKLKIENNSRSVKLSILEKALKEVKGC--DH 235


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 18/43 (41%), Positives = 20/43 (46%)
 Frame = +2

Query: 497 PLARGVPLQPLPHRVPVQGDGGQGLRHPVQPRGRAQGHVLPPH 625
           P+   VP  P P  VPV  + GQ L  PV P        LPPH
Sbjct: 671 PVVPEVPSVPQPPAVPVVPEAGQ-LNEPVVP-------PLPPH 705


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/31 (29%), Positives = 21/31 (67%)
 Frame = +3

Query: 96  CQKSLQQWSTPQPSRNWRLVSASSRDPTLSR 188
           CQK +++ ++ + + NW+L+ A S+  + S+
Sbjct: 438 CQKGVEESASEEEAINWKLLMAVSKRASRSK 468


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,893,423
Number of Sequences: 5004
Number of extensions: 57635
Number of successful extensions: 218
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)