Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_M21
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    48   2e-06
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    27   3.6  
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit...    26   6.3  
SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   6.3  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   8.3  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    26   8.3  
SPAC6G9.13c |bqt1|mug23, rec26|bouquet formation protein Bqt1|Sc...    26   8.3  

>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 37/151 (24%), Positives = 71/151 (47%), Gaps = 6/151 (3%)
 Frame = +1

Query: 388 LQKLPIPKDSNDGTF---IFVSKDYDKKDVLLILIHGSGVVRAGQWARS--LIINESLDK 552
           +  +PI +DS    F   +  S ++ +KD LL+++H S  V     + +  L +N+SL  
Sbjct: 453 ITNMPILRDSVSNVFNNQVLCSSNFFQKDNLLVIVHESPRVLGNGTSETNVLNLNDSLLV 512

Query: 553 GSQIPYIKKALAKDYGVVVLNTNDNHT-ADGKTILNSSTAEEHALYAWLNYISNANASSI 729
                Y++ A+ +D+G++ +N  +  T  +   +   S  +E  LY W NY+  + + +I
Sbjct: 513 DPVSLYVEWAMQQDWGLIDINIPEVVTDGENAPVDILSEVKELCLYVWDNYVELSISKNI 572

Query: 730 LIVAHSYGGVVTVSLXRRGAKXTLKXRVKAI 822
             +    GG     L    +   +  RVK +
Sbjct: 573 FFIG---GGKAVHGLVNLASSRNVSDRVKCM 600


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +1

Query: 439 VSKDYDKKDVLLILIHGSGVVRAGQWARSLIINESLDKGSQIPYIKK 579
           + K Y+  D L+ ++   G +   + A  LIINE LD G  I Y+K+
Sbjct: 650 ICKQYNYLDELVYIL---GRMGNNKEALMLIINELLDIGRAIRYVKE 693


>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
           Rep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 472

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 23/78 (29%), Positives = 26/78 (33%), Gaps = 3/78 (3%)
 Frame = +1

Query: 493 GVVRAGQWARSLIINESLDK---GSQIPYIKKALAKDYGVVVLNTNDNHTADGKTILNSS 663
           G+ R+  WA         D     S  P IK A   D  V  LNTND          +  
Sbjct: 242 GMQRSATWAPGYNYPSKFDSIPFASASPKIKAAFPFDPNVYALNTNDGPVTSTDNNCDQL 301

Query: 664 TAEEHALYAWLNYISNAN 717
                A     NY SN N
Sbjct: 302 NTRMQAWNNGFNY-SNLN 318


>SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 266

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 670 EEHALYAWLNYISNANAS 723
           +EH+LY   NY+ NAN S
Sbjct: 26  DEHSLYILDNYLKNANCS 43


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -3

Query: 278 WFICWLSISSNFSYLTI*IKYVSQFLHSFRSLHFVMHFISTRCNRLS 138
           + + +LS S +FS+L    +    +  SF  LHF+  F    C  LS
Sbjct: 122 FLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLS 168


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
            Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +2

Query: 341  SDHQLCL*YSSELRLDCKSYQSQRIQMMEHLFLFQKIMIKKMFC*Y*FTDQALCELVSGL 520
            SD+Q  L   ++L+      QSQR+    + F    + +K+M+        A  ELV  L
Sbjct: 1147 SDYQSELQKRTDLKKVVTDLQSQRLDEFMYGFGIISMKLKEMYQIITMGGNAELELVDSL 1206

Query: 521  DP 526
            DP
Sbjct: 1207 DP 1208


>SPAC6G9.13c |bqt1|mug23, rec26|bouquet formation protein
           Bqt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 100 YARRYQKYDCDLTESRLHLVLIKCITKWR 186
           ++RR Q Y     ++  H+ L+K + KWR
Sbjct: 99  WSRRLQGYQSITVQNGSHVPLVKRLEKWR 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,576,551
Number of Sequences: 5004
Number of extensions: 75831
Number of successful extensions: 195
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)