Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_M21
         (895 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033514-30|CAA22091.1|  313|Caenorhabditis elegans Hypothetical...   131   6e-31
AF016656-1|AAB66040.1|  332|Caenorhabditis elegans Hypothetical ...    28   7.8  

>AL033514-30|CAA22091.1|  313|Caenorhabditis elegans Hypothetical
           protein Y75B8A.31 protein.
          Length = 313

 Score =  131 bits (317), Expect = 6e-31
 Identities = 69/131 (52%), Positives = 92/131 (70%), Gaps = 1/131 (0%)
 Frame = +1

Query: 394 KLPIPKDSN-DGTFIFVSKDYDKKDVLLILIHGSGVVRAGQWARSLIINESLDKGSQIPY 570
           KLP   D + D +FIFVSK++ K   LL+LIHGSGVVRAGQWAR LIIN++L+ G+QIPY
Sbjct: 61  KLPGKTDEDEDLSFIFVSKNFKKAANLLVLIHGSGVVRAGQWARRLIINDNLECGTQIPY 120

Query: 571 IKKALAKDYGVVVLNTNDNHTADGKTILNSSTAEEHALYAWLNYISNANASSILIVAHSY 750
           I++A+   +GVVV+NTN N + D + +  S T  EHA   W+  I  +NA SI +VAHS 
Sbjct: 121 IERAIENGWGVVVMNTNLNESKD-QDLKYSRTPVEHAETVWIACIEPSNAKSIYVVAHSR 179

Query: 751 GGVVTVSLXRR 783
           GG  T S+ ++
Sbjct: 180 GGYDTASVLKK 190



 Score = 32.7 bits (71), Expect = 0.36
 Identities = 19/60 (31%), Positives = 31/60 (51%)
 Frame = +3

Query: 195 TMKELGYIFDSNGQVRKIGADGQPTDEPFQFVVSNDHQECQAHYEELGSAITNYVYDILQ 374
           ++ +LGY FD  G ++      +   +PF+F    D       YEELG A+   VY++L+
Sbjct: 3   SLAKLGYFFDEKGVLKT-----EKDKKPFKFTTQED-------YEELGEAVDLEVYELLE 50


>AF016656-1|AAB66040.1|  332|Caenorhabditis elegans Hypothetical
           protein C35A11.3 protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 29  ESLRFEFQDLDAYKFSFHECNSRSTHVDIKSTTATSQKV 145
           + L FE++D++A  F +H C  R TH D     A  +K+
Sbjct: 228 DCLPFEYRDINA--FIYHICWDRDTHADGNFIDALLEKM 264


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,540,811
Number of Sequences: 27780
Number of extensions: 421687
Number of successful extensions: 995
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)