Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_M21
         (895 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.6  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   5.0  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   5.0  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   8.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 306 GDHCSQQIGMVHLLAVHQLQFFLLDH 229
           G H  QQ+   H+L+  QLQ F+  H
Sbjct: 70  GIHQMQQLLQQHILSPTQLQSFMQQH 95


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -3

Query: 677 CSSAVLLLRMVFPSAVWLSFVFSTTTP 597
           CS  +   ++VF +  WL ++ S   P
Sbjct: 361 CSQCIWQEKIVFAAVTWLGWINSGMNP 387


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 683 RACSSAVLLLRMVFPSAVWL-SFVFSTTTP 597
           +ACSS V++LRM     V   S +F+   P
Sbjct: 412 KACSSEVMMLRMARKYDVQTDSIIFANNQP 441


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +3

Query: 366 ILQNSDWIAKVTNPKGFK*WN 428
           ++ N D+I +   P G + WN
Sbjct: 40  LISNGDYIEENNMPNGMQIWN 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,433
Number of Sequences: 438
Number of extensions: 5446
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)