Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_M20
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.09c |||cation dependent mannose-6-phosphate cargo recept...    29   0.88 
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    28   2.0  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   6.2  
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces...    26   8.2  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    26   8.2  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    26   8.2  

>SPBC530.09c |||cation dependent mannose-6-phosphate cargo receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 274 VSIGTVFCLKAILSYYSMGFYYKITLFSSTNIRSI 170
           VS+  +FC  A L+Y+  GF Y+  + ++  +R I
Sbjct: 207 VSVFLLFCAIAFLAYFVGGFVYQRVVLNARGLRQI 241


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 725 SSTPPSRHDNHGRRRXTGLIK 787
           S +PP ++DNHGRR  T  I+
Sbjct: 131 SPSPPPQYDNHGRRLNTREIR 151


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +2

Query: 596  VHYNL*QKSQEFLLSGE-SRYHYKKAQLRVVHGFGGSCGTVLR*SSTPPSRHDNHGRRRX 772
            +H NL       + S E SR  +   Q R    FG  CGT++   STP   +   G  + 
Sbjct: 1065 LHSNLHSPVSPVVDSNEDSRLKFLSTQ-RPAFSFG-PCGTIVMAFSTPSGLYTTSG--KG 1120

Query: 773  TGLIKGTIKVK 805
            T  I G IK++
Sbjct: 1121 TKFIAGPIKIE 1131


>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 340 RKQKSFKMLRNIIQHTTWIYISPSRIAKWPYINFS 444
           R+ K F+ML NI+ H    Y  P    K+   +FS
Sbjct: 43  RRYKDFEMLHNILSHDYNGYAIPPLPRKYTVSSFS 77


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -3

Query: 362 ILKLFCFLRRITRTPAITXSGARTARTGRSQYWHRFLSQSHFILLFYGFL 213
           +L L  +L R+ R   I+ +         ++YW RF + + FI   +G+L
Sbjct: 87  VLYLEEYLARL-RKECISQTNHEEQLAAYAKYWTRFTTSARFINHLFGYL 135


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 525 KWTHPDYGTKKYV 487
           +W HPDY  K+Y+
Sbjct: 537 QWVHPDYRNKEYI 549


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,363,065
Number of Sequences: 5004
Number of extensions: 70962
Number of successful extensions: 168
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)