Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_M20
         (886 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0796 + 6190931-6192745                                           32   0.70 
07_03_0409 + 17817046-17817126,17818320-17818523,17818744-178188...    29   6.6  
05_03_0142 - 8866316-8866608,8867652-8867886,8868801-8869076,886...    29   6.6  
06_01_0807 - 6069998-6071326                                           28   8.7  

>01_01_0796 + 6190931-6192745
          Length = 604

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = -2

Query: 873 DSSXSHXFFXKXLEHSX*GX*QLFTLIVPLMRPVNLRLP*LSWRLGGVELQRSTVPHEPP 694
           D+     FF K  + S     +L   ++ + + +N+RLP L  R G   +Q S+VP  PP
Sbjct: 138 DTKKKKLFFSKADKLSSDEMNELLAEMLEIKKELNVRLPPLRRRGGKRPIQGSSVPPPPP 197

Query: 693 NP 688
            P
Sbjct: 198 PP 199


>07_03_0409 +
           17817046-17817126,17818320-17818523,17818744-17818856,
           17819446-17819491,17819741-17819787,17820250-17820325,
           17820865-17820937,17821059-17821204,17821382-17821467,
           17821734-17821873,17821944-17822083,17822171-17822221,
           17823644-17823702,17823793-17823949,17824793-17824845,
           17824936-17825034,17825876-17825990,17826075-17826197,
           17826417-17826584
          Length = 658

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 685 YNA*LGFFIMVPRLSTKEKLLRFLLQIVMH 596
           YN  LGF+ +VP+    E+L    +Q+V H
Sbjct: 359 YNNRLGFYFIVPQKDITERLPNKFIQVVRH 388


>05_03_0142 -
           8866316-8866608,8867652-8867886,8868801-8869076,
           8869166-8869292,8869869-8870116,8870189-8871104,
           8871980-8872086,8872562-8872930
          Length = 856

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 672 WAFL*WYRDSPLRRNSCDFCYKL*CTASVQQLTD 571
           W++L  +RD+P   + C FC  L C   +QQ+++
Sbjct: 436 WSYL--HRDNPEGCSLCPFCLVLPCLGKLQQISN 467


>06_01_0807 - 6069998-6071326
          Length = 442

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 341 LRRITRTPAITXSGARTARTGRSQYWHRFLSQS 243
           LRR          GAR+AR GRS  W  F++++
Sbjct: 313 LRRTAVREGRVGGGARSARIGRSDRWPSFIART 345


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,173,141
Number of Sequences: 37544
Number of extensions: 436559
Number of successful extensions: 919
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)