Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_M20
         (886 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23511-5|AAC46794.1|  578|Caenorhabditis elegans Hypothetical pr...    66   3e-11
Z82058-2|CAB04863.1|  224|Caenorhabditis elegans Hypothetical pr...    29   4.4  

>U23511-5|AAC46794.1|  578|Caenorhabditis elegans Hypothetical
           protein C32D5.6 protein.
          Length = 578

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 43/142 (30%), Positives = 73/142 (51%), Gaps = 2/142 (1%)
 Frame = +3

Query: 351 EFQDATEYHPTYDMDLHI--SFEDCEVAIHKFFNNDLVGAMNIMRPWARTSLYHSLGASI 524
           E+ DA + H TY   L +  +  + ++ ++ F NN    A   M      S+YHS+G + 
Sbjct: 20  EYLDAYD-HVTYSNSLELLDTIAETQITLNLFMNNKFELAEERMAELYDKSMYHSMGYTC 78

Query: 525 FEFIPAMLTFDHEQIGRSIVALKQCITICNKNRKSFSLVESLGTIIKKPNYALYTDLEAH 704
             FI A++T + + + ++  A K    I  K R+  S+ E++     K      TD E H
Sbjct: 79  ILFIKAVMTVNKQDMEKAAEASKLSCEIIEKFRERRSIKETIFGASAKGK--KMTDEELH 136

Query: 705 AELCYAEALLLQAAMTIMEGED 770
           AELCYA++LL++A +T    ++
Sbjct: 137 AELCYAQSLLIRAMLTFFHDDN 158


>Z82058-2|CAB04863.1|  224|Caenorhabditis elegans Hypothetical
           protein T27C5.2 protein.
          Length = 224

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 667 FFIMVPRLSTKEKLLRFLLQIVMHCFSATID 575
           +F++ PR+   EK +RF+L  V      TID
Sbjct: 146 YFLITPRIDPTEKWIRFILSTVAWALVHTID 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,501,888
Number of Sequences: 27780
Number of extensions: 394854
Number of successful extensions: 897
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)