Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_M16
         (998 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.59 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    29   1.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   5.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   9.5  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.59
 Identities = 22/73 (30%), Positives = 26/73 (35%)
 Frame = +2

Query: 545 PXEXPXAXPXGRAFHXPXXAPPGGXXGAPXFXGXAPT*XHXLAXPRPXGLXPXXXRXXPX 724
           P   P + P       P  APP    GAP      P+    +A P P G+ P      P 
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPS--APIAPPLPAGM-PAAPPLPPA 472

Query: 725 XPXXPXPLAVPVP 763
            P  P P   P P
Sbjct: 473 AP-APPPAPAPAP 484


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 17/41 (41%), Positives = 19/41 (46%)
 Frame = -3

Query: 996 PXXPGGXGTGAXXGAXXFXGGRXXRGGGAXPXQVFGRXGER 874
           P   GG G G+  G   F GGR   GGG    +  GR G R
Sbjct: 5   PGSRGGRG-GSRGGRGGFNGGRGGFGGGRGGARGGGRGGAR 44


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 16/60 (26%), Positives = 17/60 (28%)
 Frame = +1

Query: 775 LVXPRKPPPRXXXIXXXXXXXXXXXXXXXXGXXPFPXTXKXLXXXGXPPPXXPPPPKXXG 954
           L  P  PPP                     G  P P     +   G PPP  PPP    G
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +1

Query: 916 PPPXXPPPPKXXGPXPGAGXXPXRXPG 996
           PP   PPPP   G  P +   P   PG
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPG 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,566,726
Number of Sequences: 5004
Number of extensions: 14852
Number of successful extensions: 69
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 517271174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)