Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_M16
(998 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1136 + 24218601-24218734,24218769-24219906 35 0.088
12_02_0299 - 17051570-17052474,17053542-17053755 27 0.85
01_06_1678 - 39095986-39096205,39096400-39096477,39096578-390969... 31 1.9
03_01_0023 + 198414-198968 30 2.5
05_01_0142 - 940421-940701,941262-941574 29 4.4
04_01_0354 - 4646826-4647314 25 4.4
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 25 4.8
01_07_0021 - 40533864-40534583,40534779-40534814,40534909-405350... 29 5.8
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703... 29 5.8
08_02_1019 - 23657175-23658047 29 7.7
07_01_0080 + 587674-588510 29 7.7
04_04_0198 + 23502657-23502900,23505228-23505298,23505690-235057... 29 7.7
09_04_0081 - 14400293-14400397,14400953-14401036,14401144-144012... 25 8.6
09_06_0149 - 21222976-21223065,21223460-21224173 25 9.1
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 35.1 bits (77), Expect = 0.088
Identities = 29/80 (36%), Positives = 30/80 (37%)
Frame = -3
Query: 765 LGTGTARGXGXXGXXGXXRXXSGXRPXGRGXARXWX*VGAXPXNXGAPXXPPGGAXXGXW 586
LG G AR G G G G G G AR G GAP GG G
Sbjct: 101 LGGGGARPPGGGGGGGPPSLPPGA--GGGGGARPPAPGGGG--GGGAPRRVLGGGGGGGA 156
Query: 585 KARPXGXAXGXSXGREXGXG 526
ARP G G + GR G G
Sbjct: 157 LARPPGGGRGGALGRPPGGG 176
Score = 28.7 bits (61), Expect = 7.7
Identities = 27/82 (32%), Positives = 27/82 (32%), Gaps = 3/82 (3%)
Frame = -3
Query: 762 GTGTAR--GXGXXGXXGXXRXXSGXRPXGRGXARXWX*VGAXPXNXGAPXXPPGGAXXGX 589
G G AR G G G R G G AR GA PPGG G
Sbjct: 126 GGGGARPPAPGGGGGGGAPRRVLGGGGGGGALARP-----PGGGRGGALGRPPGGGGGGG 180
Query: 588 WKAR-PXGXAXGXSXGREXGXG 526
R P G G GR G G
Sbjct: 181 GPGRAPGGGGGGGGPGRAPGGG 202
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 26.6 bits (56), Expect(2) = 0.85
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +1
Query: 916 PPPXXPPPPKXXGPXP 963
PPP PPPP P P
Sbjct: 324 PPPPPPPPPSFPWPFP 339
Score = 23.8 bits (49), Expect(2) = 0.85
Identities = 9/22 (40%), Positives = 9/22 (40%)
Frame = +1
Query: 877 FPXTXKXLXXXGXPPPXXPPPP 942
FP PPP PPPP
Sbjct: 310 FPPLPSFYPSPPPPPPPPPPPP 331
>01_06_1678 -
39095986-39096205,39096400-39096477,39096578-39096949,
39097374-39097671,39097867-39098077,39098331-39099023
Length = 623
Score = 30.7 bits (66), Expect = 1.9
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +2
Query: 875 RSPXRPXTXXGXAPPPRXXLPPXNXXAPXXAPVPXPPG 988
R P P PPP PP + P VP PPG
Sbjct: 118 RPPPPPPPHPPEDPPPHPPHPPDHPPPPPPCRVPPPPG 155
>03_01_0023 + 198414-198968
Length = 184
Score = 30.3 bits (65), Expect = 2.5
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -1
Query: 992 GXRXGWXPAPGXGPLXXGGGGXXGGG 915
G + G P+PG G GGGG GGG
Sbjct: 26 GCQCGSCPSPGGGGGGGGGGGGGGGG 51
>05_01_0142 - 940421-940701,941262-941574
Length = 197
Score = 29.5 bits (63), Expect = 4.4
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +1
Query: 910 GXPPPXXPPPPKXXGPXPGAGXXP 981
G PP PPPP P PGA P
Sbjct: 34 GYPPQGYPPPPGAYPPPPGAYPPP 57
>04_01_0354 - 4646826-4647314
Length = 162
Score = 24.6 bits (51), Expect(2) = 4.4
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +1
Query: 874 PFPXTXKXLXXXGXPPPXXPPPP 942
P P L PPP PPPP
Sbjct: 81 PRPHPLPNLNLSPPPPPPPPPPP 103
Score = 23.4 bits (48), Expect(2) = 4.4
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +1
Query: 916 PPPXXPPPPK 945
PPP PPPP+
Sbjct: 96 PPPPPPPPPQ 105
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 25.0 bits (52), Expect(2) = 4.8
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +1
Query: 874 PFPXTXKXLXXXGXPPPXXPPPP 942
P P L PPP PPPP
Sbjct: 604 PPPPPPPILPNRSVPPPPPPPPP 626
Score = 24.2 bits (50), Expect(2) = 4.8
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +1
Query: 874 PFPXTXKXLXXXGXPPPXXPPPP 942
P P K PPP PPPP
Sbjct: 552 PPPSGNKPAFSPPPPPPPPPPPP 574
Score = 23.4 bits (48), Expect(2) = 4.8
Identities = 10/26 (38%), Positives = 10/26 (38%)
Frame = +1
Query: 916 PPPXXPPPPKXXGPXPGAGXXPXRXP 993
PPP PPPP P P P
Sbjct: 585 PPPPPPPPPLPNCLVPSPPPPPPPPP 610
Score = 22.6 bits (46), Expect(2) = 4.8
Identities = 8/25 (32%), Positives = 10/25 (40%)
Frame = +1
Query: 919 PPXXPPPPKXXGPXPGAGXXPXRXP 993
PP PPPP+ P + P
Sbjct: 665 PPPPPPPPRSSSRTPTGAATSSKGP 689
>01_07_0021 -
40533864-40534583,40534779-40534814,40534909-40535048,
40535837-40535922,40536430-40536653,40536770-40536865,
40538766-40538833,40539945-40540055,40540799-40540955
Length = 545
Score = 29.1 bits (62), Expect = 5.8
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +1
Query: 916 PPPXXPPPPKXXGPXPGAGXXPXRXP 993
PPP PPPP+ P P P P
Sbjct: 432 PPPEHPPPPESTSPPPPPTSDPPPVP 457
>01_01_0892 +
7037384-7037795,7038447-7038962,7039507-7039593,
7039698-7039768,7040148-7040224,7040380-7040527,
7040973-7041134,7041374-7041694
Length = 597
Score = 29.1 bits (62), Expect = 5.8
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +1
Query: 874 PFPXTXKXLXXXGXPPPXXPPPPKXXGPXPG 966
P P L G PPP PPPP G G
Sbjct: 112 PPPPPPHLLHYYGHPPPPPPPPPPFKGDHYG 142
>08_02_1019 - 23657175-23658047
Length = 290
Score = 28.7 bits (61), Expect = 7.7
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = -1
Query: 992 GXRXGWXPAPGXGPLXXGGGGXXGGG 915
G G P PG G GGGG GGG
Sbjct: 33 GGGGGGVPKPGGGVGGGGGGGGGGGG 58
>07_01_0080 + 587674-588510
Length = 278
Score = 28.7 bits (61), Expect = 7.7
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +1
Query: 916 PPPXXPPPPKXXGPXPGAGXXPXRXP 993
PPP PPPP P P P P
Sbjct: 91 PPPPPPPPPSSGSPPPPPPPPPPPPP 116
>04_04_0198 +
23502657-23502900,23505228-23505298,23505690-23505727,
23505905-23507693
Length = 713
Score = 28.7 bits (61), Expect = 7.7
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +1
Query: 916 PPPXXPPPPKXXGPXPGAGXXP 981
PPP PPPP P P P
Sbjct: 549 PPPPPPPPPPPPAPAPALAPAP 570
>09_04_0081 -
14400293-14400397,14400953-14401036,14401144-14401214,
14401293-14401380,14401487-14401678,14401772-14402704
Length = 490
Score = 25.0 bits (52), Expect(2) = 8.6
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +1
Query: 910 GXPPPXXPPPP 942
G PPP PPPP
Sbjct: 218 GAPPPPPPPPP 228
Score = 21.8 bits (44), Expect(2) = 8.6
Identities = 9/26 (34%), Positives = 10/26 (38%)
Frame = +1
Query: 916 PPPXXPPPPKXXGPXPGAGXXPXRXP 993
PPP P P+ P A P P
Sbjct: 239 PPPPHHPAPRPPPPMAAAPRQPAALP 264
>09_06_0149 - 21222976-21223065,21223460-21224173
Length = 267
Score = 25.0 bits (52), Expect(2) = 9.1
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +1
Query: 916 PPPXXPPPPK 945
PPP PPPPK
Sbjct: 118 PPPPPPPPPK 127
Score = 21.8 bits (44), Expect(2) = 9.1
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = +1
Query: 898 LXXXGXPPPXXPPPP 942
L G PP PPPP
Sbjct: 111 LPLLGERPPPPPPPP 125
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,498,622
Number of Sequences: 37544
Number of extensions: 281340
Number of successful extensions: 4000
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3308
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2928685000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -