Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_M16
(998 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT022850-1|AAY55266.1| 538|Drosophila melanogaster IP13040p pro... 37 0.038
AE013599-1243|AAF58688.1| 610|Drosophila melanogaster CG13214-P... 37 0.038
AY118940-1|AAM50800.1| 79|Drosophila melanogaster LD24950p pro... 34 0.27
AY122174-1|AAM52686.1| 877|Drosophila melanogaster LD34142p pro... 32 1.1
AY071124-1|AAL48746.1| 420|Drosophila melanogaster RE17165p pro... 32 1.1
AE014296-2433|AAF49702.1| 2061|Drosophila melanogaster CG9425-PA... 32 1.1
AE014296-2432|AAS65008.1| 2103|Drosophila melanogaster CG9425-PB... 32 1.1
AE014296-850|AAF47902.2| 420|Drosophila melanogaster CG15021-PA... 32 1.1
U02042-1|AAA19249.1| 606|Drosophila melanogaster GABA receptor ... 31 3.3
M69057-3|AAA28558.1| 595|Drosophila melanogaster GABA-alpha rec... 31 3.3
M69057-2|AAA28557.1| 601|Drosophila melanogaster GABA-alpha rec... 31 3.3
M69057-1|AAA28556.1| 606|Drosophila melanogaster GABA-alpha rec... 31 3.3
AE014297-1625|AAF54898.1| 460|Drosophila melanogaster CG11670-P... 31 3.3
AE014296-1598|AAN11989.1| 585|Drosophila melanogaster CG10537-P... 31 3.3
AE014296-1597|AAF50311.1| 606|Drosophila melanogaster CG10537-P... 31 3.3
AE014296-1596|AAN11988.1| 606|Drosophila melanogaster CG10537-P... 31 3.3
U21123-1|AAA85120.1| 684|Drosophila melanogaster ena polypeptid... 30 5.7
BT004488-1|AAO42652.1| 687|Drosophila melanogaster LD23655p pro... 30 5.7
AY084210-1|AAL89948.1| 831|Drosophila melanogaster SD08336p pro... 30 5.7
AE014296-2897|AAF49349.4| 926|Drosophila melanogaster CG13731-P... 30 5.7
AE013599-2829|AAM68439.1| 829|Drosophila melanogaster CG15112-P... 30 5.7
AE013599-2828|AAX52697.1| 684|Drosophila melanogaster CG15112-P... 30 5.7
AE013599-2827|AAM68438.2| 684|Drosophila melanogaster CG15112-P... 30 5.7
AE013599-2826|AAF57598.2| 684|Drosophila melanogaster CG15112-P... 30 5.7
AE013599-2825|AAX52696.1| 687|Drosophila melanogaster CG15112-P... 30 5.7
AY119067-1|AAM50927.1| 217|Drosophila melanogaster LP08165p pro... 29 7.6
AE013599-1228|AAF58703.1| 120|Drosophila melanogaster CG13227-P... 29 7.6
>BT022850-1|AAY55266.1| 538|Drosophila melanogaster IP13040p
protein.
Length = 538
Score = 37.1 bits (82), Expect = 0.038
Identities = 44/162 (27%), Positives = 47/162 (29%), Gaps = 4/162 (2%)
Frame = -3
Query: 996 PXXPGGXGTGAXXGAXXFXGGRXXRGGGAXPXQ--VFGRXGERXXXXXXXXXXXANXGXX 823
P PGG G G GA GG RGGG P G G G
Sbjct: 324 PGSPGGGGYGGQGGAGGGYGGGGGRGGGGAPGAPGAPGSPGGGGFGGQGGGGGFGGGGGR 383
Query: 822 AWNXXXXXXXXXGXXQXX*LGTGTARGXGXXGXXGXXRXXSGXRPXGRGXARXWX*VGAX 643
G G G G G G G G G+G + G
Sbjct: 384 GGAPGAPGSPGGGGFGGQGGGGGYGGGAGRGGAPGAPGSPGGGGFGGQGGGGGFGAGGGR 443
Query: 642 PXNXGAPXXP--PGGAXXGXWKARPXGXAXGXSXGREXGXGL 523
GAP P PGG G P G + GR G GL
Sbjct: 444 GGAGGAPGGPGSPGGPGYGGGAGGP-----GGAGGRPGGPGL 480
Score = 32.3 bits (70), Expect = 1.1
Identities = 22/79 (27%), Positives = 26/79 (32%), Gaps = 2/79 (2%)
Frame = -3
Query: 762 GTGTARGXGXXGXXGXXRXXSGXRPXGRGXARXWX*VGAXPXNXGAPXXP--PGGAXXGX 589
G G+ G G G G G G+G + G G+P P PGG G
Sbjct: 210 GYGSGGGSGRGGAPGGPGAPGGGGFGGQGGGGGYGGAGGGAGRGGSPGGPGSPGGGGFGG 269
Query: 588 WKARPXGXAXGXSXGREXG 532
G G GR G
Sbjct: 270 QGGAGGGYGGGGGGGRGGG 288
Score = 29.9 bits (64), Expect = 5.7
Identities = 23/81 (28%), Positives = 26/81 (32%), Gaps = 2/81 (2%)
Frame = -3
Query: 762 GTGTARGXGXXGXXGXXRXXSGXRPXGRGXARXWX*VGAXPXNXGAPXXP--PGGAXXGX 589
G G G G G G G G+G A G GAP P PG G
Sbjct: 308 GGGFGGGGGRGGAPGAPGSPGGGGYGGQGGAGGGYGGGGGRGGGGAPGAPGAPGSPGGGG 367
Query: 588 WKARPXGXAXGXSXGREXGXG 526
+ + G G GR G
Sbjct: 368 FGGQGGGGGFGGGGGRGGAPG 388
>AE013599-1243|AAF58688.1| 610|Drosophila melanogaster CG13214-PA,
isoform A protein.
Length = 610
Score = 37.1 bits (82), Expect = 0.038
Identities = 44/162 (27%), Positives = 47/162 (29%), Gaps = 4/162 (2%)
Frame = -3
Query: 996 PXXPGGXGTGAXXGAXXFXGGRXXRGGGAXPXQ--VFGRXGERXXXXXXXXXXXANXGXX 823
P PGG G G GA GG RGGG P G G G
Sbjct: 396 PGSPGGGGYGGQGGAGGGYGGGGGRGGGGAPGAPGAPGSPGGGGFGGQGGGGGFGGGGGR 455
Query: 822 AWNXXXXXXXXXGXXQXX*LGTGTARGXGXXGXXGXXRXXSGXRPXGRGXARXWX*VGAX 643
G G G G G G G G G+G + G
Sbjct: 456 GGAPGAPGSPGGGGFGGQGGGGGYGGGAGRGGAPGAPGSPGGGGFGGQGGGGGFGAGGGR 515
Query: 642 PXNXGAPXXP--PGGAXXGXWKARPXGXAXGXSXGREXGXGL 523
GAP P PGG G P G + GR G GL
Sbjct: 516 GGAGGAPGGPGSPGGPGYGGGAGGP-----GGAGGRPGGPGL 552
Score = 32.3 bits (70), Expect = 1.1
Identities = 22/79 (27%), Positives = 26/79 (32%), Gaps = 2/79 (2%)
Frame = -3
Query: 762 GTGTARGXGXXGXXGXXRXXSGXRPXGRGXARXWX*VGAXPXNXGAPXXP--PGGAXXGX 589
G G+ G G G G G G+G + G G+P P PGG G
Sbjct: 282 GYGSGGGSGRGGAPGGPGAPGGGGFGGQGGGGGYGGAGGGAGRGGSPGGPGSPGGGGFGG 341
Query: 588 WKARPXGXAXGXSXGREXG 532
G G GR G
Sbjct: 342 QGGAGGGYGGGGGGGRGGG 360
Score = 29.9 bits (64), Expect = 5.7
Identities = 23/81 (28%), Positives = 26/81 (32%), Gaps = 2/81 (2%)
Frame = -3
Query: 762 GTGTARGXGXXGXXGXXRXXSGXRPXGRGXARXWX*VGAXPXNXGAPXXP--PGGAXXGX 589
G G G G G G G G+G A G GAP P PG G
Sbjct: 380 GGGFGGGGGRGGAPGAPGSPGGGGYGGQGGAGGGYGGGGGRGGGGAPGAPGAPGSPGGGG 439
Query: 588 WKARPXGXAXGXSXGREXGXG 526
+ + G G GR G
Sbjct: 440 FGGQGGGGGFGGGGGRGGAPG 460
>AY118940-1|AAM50800.1| 79|Drosophila melanogaster LD24950p
protein.
Length = 79
Score = 34.3 bits (75), Expect = 0.27
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +3
Query: 336 PPGXRPPXAXGXQXPRALSRSQLHXG 413
PP RPP G Q P L R QLH G
Sbjct: 41 PPALRPPTGPGVQCPALLQRQQLHSG 66
>AY122174-1|AAM52686.1| 877|Drosophila melanogaster LD34142p
protein.
Length = 877
Score = 32.3 bits (70), Expect = 1.1
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = -1
Query: 995 PGXRXGWXPAPGXGPLXXGGGGXXGGG 915
PG G P PG GP GGG GGG
Sbjct: 137 PGPGTGGGPGPGPGPPPHYGGGGGGGG 163
>AY071124-1|AAL48746.1| 420|Drosophila melanogaster RE17165p
protein.
Length = 420
Score = 32.3 bits (70), Expect = 1.1
Identities = 42/171 (24%), Positives = 46/171 (26%)
Frame = +1
Query: 484 PDXPPXTXSFXAXEPXPPLXPXRXPGRRASWXXLPRAXXRXTXXXXXGPPIPGXGAHLXP 663
P P S+ + PP P + P A P T PP P A P
Sbjct: 84 PTPPAPRPSYGPPQTQPPRPPPQ-PTPSAPAPPPPSYGPPQTPPPRP-PPQPTPSAPAPP 141
Query: 664 XSRXXXPXXPXPRXXPXXPXXPXXXXXXXXXXXXXXXLVXPRKPPPRXXXIXXXXXXXXX 843
S P P PR P P P PP
Sbjct: 142 PS-YGPPQTPPPRPPPQPT--PSAPAPSYGPPQPQPPAPQPPSPPSPQPGPEYLPPDQPK 198
Query: 844 XXXXXXXGXXPFPXTXKXLXXXGXPPPXXPPPPKXXGPXPGAGXXPXRXPG 996
P P + G PP PPPPK P PG G P PG
Sbjct: 199 PRPTPSRPQPPPPPPPRPQPTPGYGPPPPPPPPKPQ-PTPGYG-PPTPPPG 247
Score = 30.7 bits (66), Expect = 3.3
Identities = 40/166 (24%), Positives = 44/166 (26%), Gaps = 6/166 (3%)
Frame = +1
Query: 484 PDXPPXTXSFXAXEPXPP-LXPXRXPGRRASWXXLPRAXXRXTXXXXXGPPIPGXGAHLX 660
P PP + A P PP P + P R P A PP P G
Sbjct: 100 PPRPPPQPTPSAPAPPPPSYGPPQTPPPRPPPQPTPSAP---------APP-PSYGPPQT 149
Query: 661 PXSRXXX---PXXPXPRXXPXXPXXPXXXXXXXXXXXXXXXLVXPRKPPPRXXXIXXXXX 831
P R P P P P P P + P +P PR
Sbjct: 150 PPPRPPPQPTPSAPAPSYGPPQPQPPAPQPPSPPSPQPGPEYLPPDQPKPRPTPSRPQPP 209
Query: 832 XXXXXXXXXXXGXXPFPXTX--KXLXXXGXPPPXXPPPPKXXGPXP 963
G P P K G PP PP P P P
Sbjct: 210 PPPPPRPQPTPGYGPPPPPPPPKPQPTPGYGPPTPPPGPGPAQPAP 255
>AE014296-2433|AAF49702.1| 2061|Drosophila melanogaster CG9425-PA,
isoform A protein.
Length = 2061
Score = 32.3 bits (70), Expect = 1.1
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = -1
Query: 995 PGXRXGWXPAPGXGPLXXGGGGXXGGG 915
PG G P PG GP GGG GGG
Sbjct: 1321 PGPGTGGGPGPGPGPPPHYGGGGGGGG 1347
>AE014296-2432|AAS65008.1| 2103|Drosophila melanogaster CG9425-PB,
isoform B protein.
Length = 2103
Score = 32.3 bits (70), Expect = 1.1
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = -1
Query: 995 PGXRXGWXPAPGXGPLXXGGGGXXGGG 915
PG G P PG GP GGG GGG
Sbjct: 1363 PGPGTGGGPGPGPGPPPHYGGGGGGGG 1389
>AE014296-850|AAF47902.2| 420|Drosophila melanogaster CG15021-PA
protein.
Length = 420
Score = 32.3 bits (70), Expect = 1.1
Identities = 42/171 (24%), Positives = 46/171 (26%)
Frame = +1
Query: 484 PDXPPXTXSFXAXEPXPPLXPXRXPGRRASWXXLPRAXXRXTXXXXXGPPIPGXGAHLXP 663
P P S+ + PP P + P A P T PP P A P
Sbjct: 84 PTPPAPRPSYGPPQTQPPRPPPQ-PTPSAPAPPPPSYGPPQTPPPRP-PPQPTPSAPAPP 141
Query: 664 XSRXXXPXXPXPRXXPXXPXXPXXXXXXXXXXXXXXXLVXPRKPPPRXXXIXXXXXXXXX 843
S P P PR P P P PP
Sbjct: 142 PS-YGPPQTPPPRPPPQPT--PSAPAPSYGPPQPQPPAPQPPSPPSPQPGPEYLPPDQPK 198
Query: 844 XXXXXXXGXXPFPXTXKXLXXXGXPPPXXPPPPKXXGPXPGAGXXPXRXPG 996
P P + G PP PPPPK P PG G P PG
Sbjct: 199 PRPTPSRPQPPPPPPPRPQPTPGYGPPPPPPPPKPQ-PTPGYG-PPTPPPG 247
Score = 30.7 bits (66), Expect = 3.3
Identities = 40/166 (24%), Positives = 44/166 (26%), Gaps = 6/166 (3%)
Frame = +1
Query: 484 PDXPPXTXSFXAXEPXPP-LXPXRXPGRRASWXXLPRAXXRXTXXXXXGPPIPGXGAHLX 660
P PP + A P PP P + P R P A PP P G
Sbjct: 100 PPRPPPQPTPSAPAPPPPSYGPPQTPPPRPPPQPTPSAP---------APP-PSYGPPQT 149
Query: 661 PXSRXXX---PXXPXPRXXPXXPXXPXXXXXXXXXXXXXXXLVXPRKPPPRXXXIXXXXX 831
P R P P P P P P + P +P PR
Sbjct: 150 PPPRPPPQPTPSAPAPSYGPPQPQPPAPQPPSPPSPQPGPEYLPPDQPKPRPTPSRPQPP 209
Query: 832 XXXXXXXXXXXGXXPFPXTX--KXLXXXGXPPPXXPPPPKXXGPXP 963
G P P K G PP PP P P P
Sbjct: 210 PPPPPRPQPTPGYGPPPPPPPPKPQPTPGYGPPTPPPGPGPAQPAP 255
>U02042-1|AAA19249.1| 606|Drosophila melanogaster GABA receptor
protein.
Length = 606
Score = 30.7 bits (66), Expect = 3.3
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = -1
Query: 980 GWXPAPGXGPLXXGGGGXXGGGXP 909
G P G GP GGGG GGG P
Sbjct: 508 GPGPGQGGGPPGGGGGGGGGGGPP 531
>M69057-3|AAA28558.1| 595|Drosophila melanogaster GABA-alpha
receptor protein.
Length = 595
Score = 30.7 bits (66), Expect = 3.3
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = -1
Query: 980 GWXPAPGXGPLXXGGGGXXGGGXP 909
G P G GP GGGG GGG P
Sbjct: 497 GPGPGQGGGPPGGGGGGGGGGGPP 520
>M69057-2|AAA28557.1| 601|Drosophila melanogaster GABA-alpha
receptor protein.
Length = 601
Score = 30.7 bits (66), Expect = 3.3
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = -1
Query: 980 GWXPAPGXGPLXXGGGGXXGGGXP 909
G P G GP GGGG GGG P
Sbjct: 503 GPGPGQGGGPPGGGGGGGGGGGPP 526
>M69057-1|AAA28556.1| 606|Drosophila melanogaster GABA-alpha
receptor protein.
Length = 606
Score = 30.7 bits (66), Expect = 3.3
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = -1
Query: 980 GWXPAPGXGPLXXGGGGXXGGGXP 909
G P G GP GGGG GGG P
Sbjct: 508 GPGPGQGGGPPGGGGGGGGGGGPP 531
>AE014297-1625|AAF54898.1| 460|Drosophila melanogaster CG11670-PA
protein.
Length = 460
Score = 30.7 bits (66), Expect = 3.3
Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Frame = +1
Query: 910 GXPPPXXPPP-PKXXGPXPGAGXXP 981
G PPP PPP P GP PG P
Sbjct: 61 GRPPPGSPPPGPPPPGPPPGCPGGP 85
>AE014296-1598|AAN11989.1| 585|Drosophila melanogaster CG10537-PB,
isoform B protein.
Length = 585
Score = 30.7 bits (66), Expect = 3.3
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = -1
Query: 980 GWXPAPGXGPLXXGGGGXXGGGXP 909
G P G GP GGGG GGG P
Sbjct: 487 GPGPGQGGGPPGGGGGGGGGGGPP 510
>AE014296-1597|AAF50311.1| 606|Drosophila melanogaster CG10537-PA,
isoform A protein.
Length = 606
Score = 30.7 bits (66), Expect = 3.3
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = -1
Query: 980 GWXPAPGXGPLXXGGGGXXGGGXP 909
G P G GP GGGG GGG P
Sbjct: 508 GPGPGQGGGPPGGGGGGGGGGGPP 531
>AE014296-1596|AAN11988.1| 606|Drosophila melanogaster CG10537-PC,
isoform C protein.
Length = 606
Score = 30.7 bits (66), Expect = 3.3
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = -1
Query: 980 GWXPAPGXGPLXXGGGGXXGGGXP 909
G P G GP GGGG GGG P
Sbjct: 508 GPGPGQGGGPPGGGGGGGGGGGPP 531
>U21123-1|AAA85120.1| 684|Drosophila melanogaster ena polypeptide
protein.
Length = 684
Score = 29.9 bits (64), Expect = 5.7
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 910 GXPPPXXPPPPKXXGPXPGAGXXPXRXP 993
G P P PPPP G G G P P
Sbjct: 403 GPPAPAPPPPPPSFGGAAGGGPPPPAPP 430
>BT004488-1|AAO42652.1| 687|Drosophila melanogaster LD23655p
protein.
Length = 687
Score = 29.9 bits (64), Expect = 5.7
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 910 GXPPPXXPPPPKXXGPXPGAGXXPXRXP 993
G P P PPPP G G G P P
Sbjct: 406 GPPAPAPPPPPPSFGGAAGGGPPPPAPP 433
>AY084210-1|AAL89948.1| 831|Drosophila melanogaster SD08336p
protein.
Length = 831
Score = 29.9 bits (64), Expect = 5.7
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 910 GXPPPXXPPPPKXXGPXPGAGXXPXRXP 993
G P P PPPP G G G P P
Sbjct: 549 GPPAPAPPPPPPSFGGAAGGGPPPPAPP 576
>AE014296-2897|AAF49349.4| 926|Drosophila melanogaster CG13731-PA
protein.
Length = 926
Score = 29.9 bits (64), Expect = 5.7
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +2
Query: 875 RSPXRPXTXXGXAPPPRXXLPPXNXXAPXXAPVP 976
R P RP T PP R PP P P+P
Sbjct: 188 RPPTRPPTRPPTRPPTRPPTPPPTYLPPTNKPLP 221
>AE013599-2829|AAM68439.1| 829|Drosophila melanogaster CG15112-PB,
isoform B protein.
Length = 829
Score = 29.9 bits (64), Expect = 5.7
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 910 GXPPPXXPPPPKXXGPXPGAGXXPXRXP 993
G P P PPPP G G G P P
Sbjct: 548 GPPAPAPPPPPPSFGGAAGGGPPPPAPP 575
>AE013599-2828|AAX52697.1| 684|Drosophila melanogaster CG15112-PE,
isoform E protein.
Length = 684
Score = 29.9 bits (64), Expect = 5.7
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 910 GXPPPXXPPPPKXXGPXPGAGXXPXRXP 993
G P P PPPP G G G P P
Sbjct: 403 GPPAPAPPPPPPSFGGAAGGGPPPPAPP 430
>AE013599-2827|AAM68438.2| 684|Drosophila melanogaster CG15112-PC,
isoform C protein.
Length = 684
Score = 29.9 bits (64), Expect = 5.7
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 910 GXPPPXXPPPPKXXGPXPGAGXXPXRXP 993
G P P PPPP G G G P P
Sbjct: 403 GPPAPAPPPPPPSFGGAAGGGPPPPAPP 430
>AE013599-2826|AAF57598.2| 684|Drosophila melanogaster CG15112-PA,
isoform A protein.
Length = 684
Score = 29.9 bits (64), Expect = 5.7
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 910 GXPPPXXPPPPKXXGPXPGAGXXPXRXP 993
G P P PPPP G G G P P
Sbjct: 403 GPPAPAPPPPPPSFGGAAGGGPPPPAPP 430
>AE013599-2825|AAX52696.1| 687|Drosophila melanogaster CG15112-PD,
isoform D protein.
Length = 687
Score = 29.9 bits (64), Expect = 5.7
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 910 GXPPPXXPPPPKXXGPXPGAGXXPXRXP 993
G P P PPPP G G G P P
Sbjct: 406 GPPAPAPPPPPPSFGGAAGGGPPPPAPP 433
>AY119067-1|AAM50927.1| 217|Drosophila melanogaster LP08165p
protein.
Length = 217
Score = 29.5 bits (63), Expect = 7.6
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +1
Query: 916 PPPXXPPPPKXXGPXPGAG 972
PPP PPP P PGAG
Sbjct: 99 PPPPPPPPAPAPPPPPGAG 117
>AE013599-1228|AAF58703.1| 120|Drosophila melanogaster CG13227-PA
protein.
Length = 120
Score = 29.5 bits (63), Expect = 7.6
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +1
Query: 916 PPPXXPPPPKXXGPXP 963
PPP PPPP GP P
Sbjct: 65 PPPFGPPPPPFFGPPP 80
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,339,575
Number of Sequences: 53049
Number of extensions: 417687
Number of successful extensions: 5052
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4175
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 5058363141
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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