Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_M16
(998 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 33 0.42
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 32 0.56
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 31 0.97
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 30 2.2
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 30 2.2
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 2.2
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 2.2
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 2.2
U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical pr... 30 3.0
U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical pr... 30 3.0
L09634-1|AAA27967.1| 776|Caenorhabditis elegans Hypothetical pr... 30 3.0
Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 29 3.9
AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. 29 3.9
AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated... 29 3.9
AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated... 29 3.9
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 5.2
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 5.2
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 29 6.8
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 29 6.8
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 9.1
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 9.1
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 9.1
AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical ... 28 9.1
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 32.7 bits (71), Expect = 0.42
Identities = 22/80 (27%), Positives = 30/80 (37%)
Frame = +2
Query: 524 SPXPXSRPXEXPXAXPXGRAFHXPXXAPPGGXXGAPXFXGXAPT*XHXLAXPRPXGLXPX 703
+P P ++P P P + P P G P APT + P P + P
Sbjct: 1715 APAPVTQPAVQPAPGPVEHRYEIPAPGPAPGPALEP---APAPTSAPQIVEPLPP-VQPL 1770
Query: 704 XXRXXPXXPXXPXPLAVPVP 763
+ P P P P+A P P
Sbjct: 1771 P-QPQPTEPEEPLPIATPAP 1789
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical
protein T28C6.1 protein.
Length = 281
Score = 32.3 bits (70), Expect = 0.56
Identities = 23/73 (31%), Positives = 24/73 (32%)
Frame = -3
Query: 762 GTGTARGXGXXGXXGXXRXXSGXRPXGRGXARXWX*VGAXPXNXGAPXXPPGGAXXGXWK 583
GTG RG G G G SG G G A G G GG+ G W
Sbjct: 51 GTGGGRGGGRGGSGGGRGGGSGGGRGGSGGAG----AGGSGSGSGGWGGQDGGSSAGGWG 106
Query: 582 ARPXGXAXGXSXG 544
G G S G
Sbjct: 107 GSQGGSQGGSSGG 119
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 31.5 bits (68), Expect = 0.97
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +1
Query: 910 GXPPPXXPPPPKXXGPXP 963
G PPP PPPP GP P
Sbjct: 574 GAPPPPPPPPPMLGGPPP 591
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = +1
Query: 877 FPXTXKXLXXXGXPPPXXPPPPKXXGPXPGAGXXPXRXP 993
FP G PPP PPPP G P G P P
Sbjct: 304 FPPPPPHFMGRGMPPPFMPPPP-HFGMGPPRGFMPPPHP 341
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = +1
Query: 877 FPXTXKXLXXXGXPPPXXPPPPKXXGPXPGAGXXPXRXP 993
FP G PPP PPPP G P G P P
Sbjct: 304 FPPPPPHFMGRGMPPPFMPPPP-HFGMGPPRGFMPPPHP 341
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.3 bits (65), Expect = 2.2
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +1
Query: 910 GXPPPXXPPPPKXXGPXPGAGXXP 981
G PPP PPPPK P G+G P
Sbjct: 235 GSPPP--PPPPKGSPPLAGSGSPP 256
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.3 bits (65), Expect = 2.2
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +1
Query: 910 GXPPPXXPPPPKXXGPXPGAGXXP 981
G PPP PPPPK P G+G P
Sbjct: 256 GSPPP--PPPPKGSPPLAGSGSPP 277
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.3 bits (65), Expect = 2.2
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +1
Query: 910 GXPPPXXPPPPKXXGPXPGAGXXP 981
G PPP PPPPK P G+G P
Sbjct: 241 GSPPP--PPPPKGSPPLAGSGSPP 262
>U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical
protein R144.4a protein.
Length = 360
Score = 29.9 bits (64), Expect = 3.0
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 916 PPPXXPPPPKXXGPXPGAGXXP 981
PPP PPPP P P A P
Sbjct: 2 PPPPPPPPPPPPPPPPAASAPP 23
>U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical
protein R144.4b protein.
Length = 362
Score = 29.9 bits (64), Expect = 3.0
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 916 PPPXXPPPPKXXGPXPGAGXXP 981
PPP PPPP P P A P
Sbjct: 2 PPPPPPPPPPPPPPPPAASAPP 23
>L09634-1|AAA27967.1| 776|Caenorhabditis elegans Hypothetical
protein C30C11.4 protein.
Length = 776
Score = 29.9 bits (64), Expect = 3.0
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +1
Query: 922 PXXPPPPKXXGPXPGAGXXPXRXPG 996
P P PPK P P AG P PG
Sbjct: 747 PAAPAPPKKEEPQPAAGDQPQSQPG 771
>Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical
protein C33B4.3b protein.
Length = 993
Score = 29.5 bits (63), Expect = 3.9
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +2
Query: 914 PPPRXXLPPXNXXAPXXAPVPXPPG 988
PPP LPP + AP P P PPG
Sbjct: 794 PPPPPPLPPISSGAPPPPP-PPPPG 817
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
protein C33B4.3a protein.
Length = 1110
Score = 29.5 bits (63), Expect = 3.9
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +2
Query: 914 PPPRXXLPPXNXXAPXXAPVPXPPG 988
PPP LPP + AP P P PPG
Sbjct: 794 PPPPPPLPPISSGAPPPPP-PPPPG 817
>AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein.
Length = 468
Score = 29.5 bits (63), Expect = 3.9
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +2
Query: 890 PXTXXGXAPPPRXXLPPXNXXAPXXAPVPXPP 985
P G PPP LPP AP P P PP
Sbjct: 227 PVNAHGAPPPP--PLPPVGAGAPPPPPPPPPP 256
>AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated
protein 34, isoform b protein.
Length = 310
Score = 29.5 bits (63), Expect = 3.9
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +2
Query: 890 PXTXXGXAPPPRXXLPPXNXXAPXXAPVPXPP 985
P G PPP LPP AP P P PP
Sbjct: 213 PVNAHGAPPPP--PLPPVGAGAPPPPPPPPPP 242
>AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated
protein 34, isoform a protein.
Length = 454
Score = 29.5 bits (63), Expect = 3.9
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +2
Query: 890 PXTXXGXAPPPRXXLPPXNXXAPXXAPVPXPP 985
P G PPP LPP AP P P PP
Sbjct: 213 PVNAHGAPPPP--PLPPVGAGAPPPPPPPPPP 242
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 5.2
Identities = 15/40 (37%), Positives = 16/40 (40%)
Frame = +1
Query: 874 PFPXTXKXLXXXGXPPPXXPPPPKXXGPXPGAGXXPXRXP 993
P P + G P PPPP GP PG G P P
Sbjct: 300 PPPPPGRTPGPPGMPGMPPPPPPSRFGP-PGMGGMPPPPP 338
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 5.2
Identities = 15/40 (37%), Positives = 16/40 (40%)
Frame = +1
Query: 874 PFPXTXKXLXXXGXPPPXXPPPPKXXGPXPGAGXXPXRXP 993
P P + G P PPPP GP PG G P P
Sbjct: 310 PPPPPGRTPGPPGMPGMPPPPPPSRFGP-PGMGGMPPPPP 348
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 28.7 bits (61), Expect = 6.8
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +1
Query: 916 PPPXXPPPPKXXGPXPGAGXXPXRXP 993
PPP PPPP+ G P + P P
Sbjct: 609 PPPPPPPPPQSFGMAPISSAAPPPPP 634
Score = 28.7 bits (61), Expect = 6.8
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +1
Query: 919 PPXXPPPPKXXGPXPGAGXXPXRXP 993
PP PPPP P GAG P P
Sbjct: 630 PPPPPPPPPMGLPAVGAGAPPPPPP 654
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 28.7 bits (61), Expect = 6.8
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +1
Query: 916 PPPXXPPPPKXXGPXPGAGXXPXRXP 993
PPP PPPP+ G P + P P
Sbjct: 435 PPPPPPPPPQSFGMAPISSAAPPPPP 460
Score = 28.7 bits (61), Expect = 6.8
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +1
Query: 916 PPPXXPPPPKXXGPXPGAGXXPXRXP 993
PPP PPPP P GAG P P
Sbjct: 456 PPPPPPPPPMGL-PAVGAGAPPPPPP 480
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.3 bits (60), Expect = 9.1
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +2
Query: 890 PXTXXGXAPPPRXXLPPXNXXAPXXAPVPXPPG 988
P T PPP LPP + P P P PPG
Sbjct: 737 PITGGPPPPPPPGGLPPISGGPP---PPPPPPG 766
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.3 bits (60), Expect = 9.1
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +2
Query: 890 PXTXXGXAPPPRXXLPPXNXXAPXXAPVPXPPG 988
P T PPP LPP + P P P PPG
Sbjct: 737 PITGGPPPPPPPGGLPPISGGPP---PPPPPPG 766
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.3 bits (60), Expect = 9.1
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +2
Query: 890 PXTXXGXAPPPRXXLPPXNXXAPXXAPVPXPPG 988
P T PPP LPP + P P P PPG
Sbjct: 320 PITGGPPPPPPPGGLPPISGGPP---PPPPPPG 349
>AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical
protein ZC123.1 protein.
Length = 730
Score = 28.3 bits (60), Expect = 9.1
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 917 PPRXXLPPXNXXAPXXAPVPXPP 985
PPR PP AP P P PP
Sbjct: 128 PPRTCCPPPTPAAPPPPPPPPPP 150
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,297,054
Number of Sequences: 27780
Number of extensions: 174308
Number of successful extensions: 1669
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1378
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2615559500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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