Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_M12
(921 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 36 0.008
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 0.009
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 34 0.033
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 30 0.53
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 0.70
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 29 0.70
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.93
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 29 1.2
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.6
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 28 2.1
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 26 6.5
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|... 26 8.6
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.9 bits (79), Expect = 0.008
Identities = 21/51 (41%), Positives = 23/51 (45%)
Frame = -1
Query: 612 PXPPPVRGXXLGXGGGGXPXXXPPPPPXGGXFFXWXGXPPPPPXPLXXSSG 460
P P P+ GG P PPPPP G G PPPPP P S+G
Sbjct: 744 PAPAPIPVPPPAPIMGGPP---PPPPPPG---VAGAGPPPPPPPPPAVSAG 788
Score = 31.9 bits (69), Expect = 0.13
Identities = 18/51 (35%), Positives = 20/51 (39%)
Frame = -1
Query: 606 PPPVRGXXLGXGGGGXPXXXPPPPPXGGXFFXWXGXPPPPPXPLXXSSGAP 454
PPP + P PPP P G G PPPPP P +G P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMG------GPPPPPPPPGVAGAGPP 776
Score = 31.9 bits (69), Expect = 0.13
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -2
Query: 503 GXPPPPPXPSXXXXGRPXXPXFWXPPPPP 417
G PPPPP P P P PPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPP----PPPPP 783
Score = 28.3 bits (60), Expect = 1.6
Identities = 15/44 (34%), Positives = 16/44 (36%)
Frame = -2
Query: 545 PXPPXGGGVFFXGXGXPPPPPXPSXXXXGRPXXPXFWXPPPPPL 414
P PP GV G PPPPP R P P P +
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEPKI 805
Score = 27.9 bits (59), Expect = 2.1
Identities = 19/52 (36%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Frame = +1
Query: 514 KKTPPPXGGXGXXXXXP-PTPPXQXXPAHGGXXGXKXPPPPGX--XXTPPPP 660
K PPP P P P P GG PPPPG PPPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPP--PPPPPPGVAGAGPPPPP 779
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +1
Query: 493 GGXPXPXKKTPPPXGGXGXXXXXPPTPP 576
GG P P PPP G G PP PP
Sbjct: 759 GGPPPP----PPPPGVAGAGPPPPPPPP 782
Score = 26.6 bits (56), Expect = 4.9
Identities = 15/45 (33%), Positives = 16/45 (35%)
Frame = -1
Query: 612 PXPPPVRGXXLGXGGGGXPXXXPPPPPXGGXFFXWXGXPPPPPXP 478
P PPP G G G P PPP G + P P P
Sbjct: 762 PPPPPPPGVA---GAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = -2
Query: 494 PPPPXPSXXXXGRPXXPXFWXPPPPPLXPXXPP 396
PPPP P+ P PPP P+ PP
Sbjct: 732 PPPPPPAVIVP-TPAPAPIPVPPPAPIMGGPPP 763
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect(2) = 0.009
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +1
Query: 568 TPPXQXXPAHGGXXGXKXPPPPGXXXTPPPPSA 666
TPP + A PPPP PPPPSA
Sbjct: 1689 TPPVRPQSAAPPQMSAPTPPPPPM-SVPPPPSA 1720
Score = 27.5 bits (58), Expect = 2.8
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +3
Query: 759 PPPPPKXXKXXHTVGGXPAPPXTXXXPPXPXPKKTHPXXQPSP 887
PPPPP + PA P + PP P P + P P+P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPS--APPPPLPASSAPSV-PNP 1746
Score = 27.1 bits (57), Expect(2) = 0.009
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 760 PPPPQNXKXPXTPXGAXPPP 819
PPPP P P A PPP
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPP 1734
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.9 bits (74), Expect = 0.033
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = +3
Query: 750 SNXPPPPPKXXKXXHTVGGXPAPPXTXXXPPXPXPKKT-HPXXQPSP 887
S+ PPPPP + G P PP PP P P+ QP P
Sbjct: 334 SSLPPPPPPPRS--NAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378
Score = 32.7 bits (71), Expect = 0.075
Identities = 27/109 (24%), Positives = 34/109 (31%), Gaps = 4/109 (3%)
Frame = +1
Query: 502 PXPXKKTPPPXGGXGXXXXXPPTPPXQXXPAHGGXXGXKXPPPPGXXXTPPPP--SAXTH 675
P + PP G PP PP P G PP G PPPP SA +
Sbjct: 317 PSRRNRGKPPIGNGSSNSSLPPPPP----PPRSNAAGSIPLPPQGRSAPPPPPPRSAPST 372
Query: 676 XKKXXXPRAXXXAXHXXGXSXXXXXXTXP--PPPQNXKXPXTPXGAXPP 816
++ + + + P PP N TP PP
Sbjct: 373 GRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPP 421
Score = 31.9 bits (69), Expect = 0.13
Identities = 17/48 (35%), Positives = 17/48 (35%)
Frame = -2
Query: 539 PPXGGGVFFXGXGXPPPPPXPSXXXXGRPXXPXFWXPPPPPLXPXXPP 396
PP G G PPPPP P G P PPP P P
Sbjct: 325 PPIGNGS--SNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370
Score = 29.9 bits (64), Expect = 0.53
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Frame = -2
Query: 497 PPPPPXPSXXXXGRP----XXPXFWXPPPPP 417
PPPPP PS G+P PPPPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPP 341
Score = 28.7 bits (61), Expect = 1.2
Identities = 20/80 (25%), Positives = 23/80 (28%), Gaps = 3/80 (3%)
Frame = +3
Query: 624 PXPGXGXHTPPPIXGDTRKKXXXPTSXXXRTPXXGXLXXXXXSNXPPPPPKXXKXXHTVG 803
P P PPI + P R+ G + PPPP T G
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPST-G 373
Query: 804 GXPAP---PXTXXXPPXPXP 854
P P PP P P
Sbjct: 374 RQPPPLSSSRAVSNPPAPPP 393
Score = 28.3 bits (60), Expect = 1.6
Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 10/61 (16%)
Frame = -1
Query: 612 PXPPPVRGXX----LGXGGGGXPXXXPPPPP----XGGXFFXWXG--XPPPPPXPLXXSS 463
P PPP R +G G PPPPP G G PPPPP S+
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPST 372
Query: 462 G 460
G
Sbjct: 373 G 373
Score = 26.2 bits (55), Expect = 6.5
Identities = 15/40 (37%), Positives = 15/40 (37%), Gaps = 6/40 (15%)
Frame = -2
Query: 509 GXGXPPPPPXPSXXXXGRPXXPXFW------XPPPPPLXP 408
G PPPPP S GR P P PPP P
Sbjct: 357 GRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396
Score = 25.8 bits (54), Expect = 8.6
Identities = 13/37 (35%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Frame = -2
Query: 503 GXPPPPPXPSXXXXGRPXXPXFWXPPP-PPLXPXXPP 396
G P PP P P PP PP P PP
Sbjct: 442 GAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.9 bits (64), Expect = 0.53
Identities = 23/84 (27%), Positives = 24/84 (28%)
Frame = +1
Query: 562 PPTPPXQXXPAHGGXXGXKXPPPPGXXXTPPPPSAXTHXKKXXXPRAXXXAXHXXGXSXX 741
PPTP + P PPP PP PS P A A S
Sbjct: 130 PPTPQSELRPPTSAPPRPSI-PPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAP 188
Query: 742 XXXXTXPPPPQNXKXPXTPXGAXP 813
PP P K P P P
Sbjct: 189 SLPSAVPPMP--PKVPPPPLSQAP 210
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.5 bits (63), Expect = 0.70
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -1
Query: 558 PXXXPPPPPXGGXFFXWXGXPPPPPXP 478
P PPPPP F PPPPP P
Sbjct: 5 PPGNPPPPPPPPGFEP-PSQPPPPPPP 30
Score = 27.5 bits (58), Expect = 2.8
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -2
Query: 497 PPPPPXPSXXXXGRPXXPXFWXPPPPP 417
PPPPP P +P PPPPP
Sbjct: 10 PPPPPPPGFEPPSQP------PPPPPP 30
Score = 23.0 bits (47), Expect(2) = 4.3
Identities = 8/19 (42%), Positives = 9/19 (47%)
Frame = +1
Query: 760 PPPPQNXKXPXTPXGAXPP 816
PPPP + P P PP
Sbjct: 12 PPPPPGFEPPSQPPPPPPP 30
Score = 21.8 bits (44), Expect(2) = 4.3
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +1
Query: 628 PPGXXXTPPPP 660
PPG PPPP
Sbjct: 5 PPGNPPPPPPP 15
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 29.5 bits (63), Expect = 0.70
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +1
Query: 397 GGXXGXRGGGGGXQKXGXXGRPXXXXEGXGGGGG 498
GG G RGGG G + G GR G GG
Sbjct: 30 GGRGGARGGGRGGARGGRGGRGGARGGRGGSSGG 63
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +1
Query: 394 KGGXXGXRGGGGGXQKXGXXGRPXXXXEGXGGGGG 498
+GG G RGG GG + G G GG GG
Sbjct: 18 RGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGG 52
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +1
Query: 394 KGGXXGXRGGGGGXQKXGXXGRPXXXXEGXGGGGG 498
+GG G RGG G + G G GG GG
Sbjct: 25 RGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGG 59
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.1 bits (62), Expect = 0.93
Identities = 18/73 (24%), Positives = 23/73 (31%)
Frame = +1
Query: 502 PXPXKKTPPPXGGXGXXXXXPPTPPXQXXPAHGGXXGXKXPPPPGXXXTPPPPSAXTHXK 681
P P + P P G PP PP P P P PP P+ +
Sbjct: 1192 PPPSEAPPVPKPSVGV----PPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAP 1247
Query: 682 KXXXPRAXXXAXH 720
PR+ + H
Sbjct: 1248 SVSTPRSSVPSPH 1260
Score = 27.5 bits (58), Expect = 2.8
Identities = 23/84 (27%), Positives = 28/84 (33%), Gaps = 6/84 (7%)
Frame = +3
Query: 651 PPPIXGDTRKKXXXPT-SXXXRTPXX-GXLXXXXXSNXPPPPPKXXKXXHTV----GGXP 812
PPP+ + + P S P G S PP PK V G P
Sbjct: 1063 PPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPP 1122
Query: 813 APPXTXXXPPXPXPKKTHPXXQPS 884
P + PP P P P +PS
Sbjct: 1123 VPKPSVAAPPVPVPSGAPPVPKPS 1146
Score = 27.1 bits (57), Expect = 3.7
Identities = 18/56 (32%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Frame = +1
Query: 502 PXPXKKTPP-PXGGXGXXXXXPPTPPXQXXPAHGGXXGXKXPPPPGXXXTPPPPSA 666
P P PP P G P PP + P G PPP P PSA
Sbjct: 1172 PAPSSGIPPVPKPAAGVP---PVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSA 1224
Score = 26.6 bits (56), Expect = 4.9
Identities = 15/45 (33%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Frame = +3
Query: 762 PPPPKXXKXXHTV----GGXPAPPXTXXXPPXPXPKKTHPXXQPS 884
PP PK V G P P + PP P P P +PS
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPS 1165
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/37 (32%), Positives = 13/37 (35%)
Frame = +3
Query: 759 PPPPPKXXKXXHTVGGXPAPPXTXXXPPXPXPKKTHP 869
PPP + G P P T PP P P P
Sbjct: 1211 PPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAP 1247
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +1
Query: 565 PTPPXQXXPAHGGXXGXKXPPPPGXXXTPPPPSAXT 672
P P P G PPPPG P P+A T
Sbjct: 272 PAMPMMNVPMGPGGAPLVPPPPPGMVMASPSPAAAT 307
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = -3
Query: 853 GXGXGGXXFVXGGAGXPPTVWXXFXCFGGGGG 758
G GG GG+G PP F FGG GG
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGG 215
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = +1
Query: 394 KGGXXGXRGGGGGXQKXGXXGRPXXXXEGXGGGG 495
+GG G RGG GG + G G G GG
Sbjct: 144 RGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGG 177
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 26.2 bits (55), Expect = 6.5
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 754 TXPPPPQNXKXPXTPXG 804
T PPPP + + P TP G
Sbjct: 32 TEPPPPSSQQPPSTPNG 48
>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 25.8 bits (54), Expect = 8.6
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -2
Query: 446 PXFWXPPPPP 417
P +W PPPPP
Sbjct: 43 PTYWYPPPPP 52
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.309 0.144 0.503
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,937,478
Number of Sequences: 5004
Number of extensions: 38392
Number of successful extensions: 197
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)
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