Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_M09
(930 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 34 0.033
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.31
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 0.45
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.53
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 5.0
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 6.6
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.9 bits (74), Expect = 0.033
Identities = 29/96 (30%), Positives = 32/96 (33%), Gaps = 7/96 (7%)
Frame = +3
Query: 513 PPPPPPKXXGGXXGLGGG--XXXXPPXGGXXXVPPXXXXAPKKTFXPXGXPRXPXNPKGX 686
PPPPP + G +G G PP PP A P G P P
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPP----PPPPPRSNAAGSIPLPPQGRSAPPPPPPRS 368
Query: 687 XPXXFXPPXP----PPVXNXKXPPPYXXG-AAPTXP 779
P P P V N PPP G +AP P
Sbjct: 369 APSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALP 404
Score = 33.1 bits (72), Expect = 0.057
Identities = 28/105 (26%), Positives = 31/105 (29%), Gaps = 4/105 (3%)
Frame = +3
Query: 477 PPRGGXGXFFXXPPPPPPKXXGGXXGLGGGXXXXPPXGGXXXVPPXXXXAPK--KTFXPX 650
PP G PPPPPP G PP G PP AP + P
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSN-----AAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPL 379
Query: 651 GXPRXPXNPKGXXP--XXFXPPXPPPVXNXKXPPPYXXGAAPTXP 779
R NP P P PP+ N P+ P
Sbjct: 380 SSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLP 424
Score = 29.9 bits (64), Expect = 0.53
Identities = 25/107 (23%), Positives = 29/107 (27%), Gaps = 4/107 (3%)
Frame = +3
Query: 471 KXPPRGGXGXFFXXPPPPPPKXXG----GXXGLGGGXXXXPPXGGXXXVPPXXXXAPKKT 638
+ PP PP PPP G LG P PP + +
Sbjct: 374 RQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPP---VPTPPSLPPSAPPS 430
Query: 639 FXPXGXPRXPXNPKGXXPXXFXPPXPPPVXNXKXPPPYXXGAAPTXP 779
P P P P P PP+ P AAP P
Sbjct: 431 LPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/55 (27%), Positives = 19/55 (34%), Gaps = 6/55 (10%)
Frame = +3
Query: 705 PPXPPPVXNXKXPPPYXXGAA------PTXPQKKXAXGXXXXXXXXXXXXXXPPP 851
PP PPP + PP G++ P P + A G PPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -1
Query: 492 PPXGGGXFFXXREXPPPPPPP 430
PP G G PPPPPPP
Sbjct: 325 PPIGNGS--SNSSLPPPPPPP 343
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.7 bits (66), Expect = 0.31
Identities = 28/107 (26%), Positives = 30/107 (28%), Gaps = 2/107 (1%)
Frame = +3
Query: 480 PRGGXGXFFXXPPPPPPKXXGGXXGLGGGXXXXPPXGGXXXVPPXXXXAPKKTFXPXGXP 659
P+ G PP P P G P G VP AP P
Sbjct: 1053 PKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVP 1112
Query: 660 RXPXNPKG--XXPXXFXPPXPPPVXNXKXPPPYXXGAAPTXPQKKXA 794
P P G P P PV + P P AAP P A
Sbjct: 1113 PVPA-PSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGA 1158
Score = 27.9 bits (59), Expect = 2.2
Identities = 25/91 (27%), Positives = 25/91 (27%), Gaps = 4/91 (4%)
Frame = +3
Query: 513 PPPPPPKXXGGXXGLGGGXXXXPPXGGXXXVPPXXXXAPKKTFXPXGXPRXPXNPKG--- 683
PP P P P G VP AP G P P G
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPP 1190
Query: 684 XXPXXFXPPXP-PPVXNXKXPPPYXXGAAPT 773
P PP P P V PPP PT
Sbjct: 1191 VPPPSEAPPVPKPSVGVPPVPPPSTAPPVPT 1221
Score = 27.5 bits (58), Expect = 2.8
Identities = 25/112 (22%), Positives = 32/112 (28%), Gaps = 3/112 (2%)
Frame = +1
Query: 592 GXPXXPXXXXXPRKKLXPLXAPQGXPXTPRXXAPXFFXHPPPPXXKIXKXXXXXXXXXXX 771
G P P P ++ + AP G P P AP PP P +
Sbjct: 1058 GAPSAPPPVPAPSSEIPSIPAPSGAPPVP---APSGI--PPVPKPSVAAPPVPKPSVAVP 1112
Query: 772 XXXXXXXRGALPXXK---PPXXPPFXXPPLXKKXIKXPXPXXXXGGGXVXPP 918
+P PP P PP+ K + P G V P
Sbjct: 1113 PVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKP 1164
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 477 PPRGGXGXFFXXPPPPPPKXXGG 545
PP G G PPPPPP G
Sbjct: 766 PPPGVAGAGPPPPPPPPPAVSAG 788
Score = 25.8 bits (54), Expect = 8.7
Identities = 20/73 (27%), Positives = 22/73 (30%), Gaps = 3/73 (4%)
Frame = +3
Query: 579 PPXGGXXXVPPXXXXAPKKTFXPX---GXPRXPXNPKGXXPXXFXPPXPPPVXNXKXPPP 749
PP + P AP P G P P P G PP PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSR 791
Query: 750 YXXGAAPTXPQKK 788
Y A P+ K
Sbjct: 792 YYAPAPQAEPEPK 804
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = -2
Query: 497 PXPPXGGGFFXXXEKXPPPPPP 432
P PP G PPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783
Score = 25.4 bits (53), Expect(2) = 0.45
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = -1
Query: 495 PPPXGGGXFFXXREXPPPPPPP 430
PPP PPPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783
Score = 23.0 bits (47), Expect(2) = 0.45
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = -1
Query: 447 PPPPPPXXKKXXPGG 403
PPPPPP GG
Sbjct: 775 PPPPPPPPPAVSAGG 789
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.9 bits (64), Expect = 0.53
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 645 PXGXPRXPXNPKGXXPXXFXPPXPPP 722
P G P P P G P PP PPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 29.1 bits (62), Expect = 0.93
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -2
Query: 497 PXPPXGGGFFXXXEKXPPPPPPXXXKK 417
P PP G F + PPPPPP KK
Sbjct: 12 PPPPPG---FEPPSQPPPPPPPGYVKK 35
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -1
Query: 495 PPPXGGGXFFXXREXPPPPPPPXXKK 418
PPP F PPPPPPP K
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPPGYVK 34
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -2
Query: 497 PXPPXGGGFFXXXEKXPPPPPPXXXKK 417
P PP GF + PPPPP K+
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPPGYVKKR 36
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.6 bits (56), Expect = 5.0
Identities = 17/50 (34%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Frame = +3
Query: 486 GGXGXFFXXP--PPPPPKXXGGXXGLGGGXXXXPPXGGXXXVPPXXXXAP 629
GG G F PPP P GG G GG GG P P
Sbjct: 188 GGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGP 237
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.2 bits (55), Expect = 6.6
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Frame = +3
Query: 657 PRXPXNPKGXXPXXFXPPXP--PPVXNXKXPPPYXXGAAPTXP 779
P P P P PP P PP PPP +AP+ P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPP---SAPPPPLPASSAPSVP 1744
Score = 25.8 bits (54), Expect = 8.7
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Frame = +3
Query: 630 KKTFXPXGXPRXPXNPKGXXPXXF-XPPXPPPVXNXKXPPPY-XXGAAPTXPQKKXAXG 800
K + P P P +PK P PPPV P + A P+ P+++ + G
Sbjct: 1350 KMSLEPPVRPAVPTSPKPQIPDSSNVHAPPPPVQPMNAMPSHNAVNARPSAPERRDSFG 1408
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/28 (35%), Positives = 11/28 (39%)
Frame = +3
Query: 666 PXNPKGXXPXXFXPPXPPPVXNXKXPPP 749
P P+ P P PPP PPP
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPP 1718
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,915,726
Number of Sequences: 5004
Number of extensions: 27352
Number of successful extensions: 251
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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