Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_M05
(988 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 38 0.003
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.082
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.25
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 1.0
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 1.0
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 9.4
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 9.4
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 37.5 bits (83), Expect = 0.003
Identities = 27/90 (30%), Positives = 30/90 (33%)
Frame = +3
Query: 651 PPGSXPXWXXPSXQGXPSSRFFXLXGPPPPXXXVXXNPPPXXXGGGPTPXPXXL*VPXGX 830
P G+ P P+ G P + PP P V P P G P P P P
Sbjct: 1079 PSGAPPV---PAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVA-APPVP 1134
Query: 831 XPXRAPPXAXPPPXXPPXFFFGGXXGXPXP 920
P APP P PP G P P
Sbjct: 1135 VPSGAPPVPKPSVAAPPVPAPSGAPPVPKP 1164
Score = 31.5 bits (68), Expect = 0.19
Identities = 23/91 (25%), Positives = 24/91 (26%)
Frame = +3
Query: 609 PPLXGGXAXXXXXXPPGSXPXWXXPSXQGXPSSRFFXLXGPPPPXXXVXXNPPPXXXGGG 788
PP+ P P PS P PP P V P P G
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVP--VPSGAPPVPKPSVAAPPVPAPSGAP 1159
Query: 789 PTPXPXXL*VPXGXXPXRAPPXAXPPPXXPP 881
P P P P PP P PP
Sbjct: 1160 PVPKPSVAAPPVPAPSSGIPPVPKPAAGVPP 1190
Score = 31.1 bits (67), Expect = 0.25
Identities = 25/94 (26%), Positives = 26/94 (27%)
Frame = +3
Query: 600 SXFPPLXGGXAXXXXXXPPGSXPXWXXPSXQGXPSSRFFXLXGPPPPXXXVXXNPPPXXX 779
S PP+ P P PS P PP P V P P
Sbjct: 1118 SGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPA--PSGAPPVPKPSVAAPPVPAPS 1175
Query: 780 GGGPTPXPXXL*VPXGXXPXRAPPXAXPPPXXPP 881
G P VP P APP P PP
Sbjct: 1176 SGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP 1209
Score = 29.9 bits (64), Expect = 0.58
Identities = 17/51 (33%), Positives = 18/51 (35%)
Frame = +3
Query: 729 PPPPXXXVXXNPPPXXXGGGPTPXPXXL*VPXGXXPXRAPPXAXPPPXXPP 881
PP P P P P P P + VP P APP P PP
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPS-VGVPPVPPPSTAPPVPTPSAGLPP 1228
Score = 29.1 bits (62), Expect = 1.0
Identities = 28/104 (26%), Positives = 30/104 (28%)
Frame = +3
Query: 609 PPLXGGXAXXXXXXPPGSXPXWXXPSXQGXPSSRFFXLXGPPPPXXXVXXNPPPXXXGGG 788
PP+ + PP P PS PS PP P P
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPA-PSG------APPVPAPSGIPPVPKPSVAAP 1102
Query: 789 PTPXPXXL*VPXGXXPXRAPPXAXPPPXXPPXFFFGGXXGXPXP 920
P P P VP P APP P PP G P P
Sbjct: 1103 PVPKPSVA-VPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKP 1145
Score = 28.7 bits (61), Expect = 1.3
Identities = 19/67 (28%), Positives = 21/67 (31%)
Frame = +3
Query: 681 PSXQGXPSSRFFXLXGPPPPXXXVXXNPPPXXXGGGPTPXPXXL*VPXGXXPXRAPPXAX 860
P+ G P + PP P P P G P P P P P P
Sbjct: 1153 PAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVP-PVPPPSEAPPVPKPSVGVPPVP 1211
Query: 861 PPPXXPP 881
PP PP
Sbjct: 1212 PPSTAPP 1218
Score = 26.6 bits (56), Expect = 5.4
Identities = 15/50 (30%), Positives = 16/50 (32%)
Frame = +3
Query: 729 PPPPXXXVXXNPPPXXXGGGPTPXPXXL*VPXGXXPXRAPPXAXPPPXXP 878
PP P V P P P P P P +APP P P
Sbjct: 1198 PPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAP 1247
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.7 bits (71), Expect = 0.082
Identities = 20/62 (32%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Frame = +3
Query: 729 PPPPXXXVXXNPPPXXXGGGPTPXPXXL*VPXGXXPXRAPPXAX-----PPPXXPPXFFF 893
PPPP + P P P P P + G P PP PPP PP
Sbjct: 733 PPPPPAVIVPTPAP-----APIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSA 787
Query: 894 GG 899
GG
Sbjct: 788 GG 789
Score = 32.7 bits (71), Expect = 0.082
Identities = 20/54 (37%), Positives = 21/54 (38%)
Frame = +3
Query: 762 PPPXXXGGGPTPXPXXL*VPXGXXPXRAPPXAXPPPXXPPXFFFGGXXGXPXPP 923
PPP PTP P + VP AP PPP PP G P PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPP-----APIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 31.5 bits (68), Expect = 0.19
Identities = 20/57 (35%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Frame = +3
Query: 720 LXGPPPPXXXVXXNPPPXXXGGGPTPXPXXL*VPXGXXPXRAPP---XAXPPPXXPP 881
L PPPP V P P P P + G P PP A PPP PP
Sbjct: 729 LKSPPPPPPAVIVPTP----APAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 29.1 bits (62), Expect = 1.0
Identities = 15/46 (32%), Positives = 15/46 (32%)
Frame = +3
Query: 849 PXAXPPPXXPPXFFFGGXXGXPXPPXGGGGGVXXPXXRXXXSXGGG 986
P P P PP GG P PP G G P GG
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Frame = -1
Query: 985 PPPXEXXXRXXGXXTPPPPPXG--GXGXPXXPP 893
P P G PPPPP G G G P PP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 27.5 bits (58), Expect = 3.1
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -2
Query: 984 PPPGXPXRAXXXXGPPXPPP 925
PPP P GPP PPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP 780
Score = 27.5 bits (58), Expect = 3.1
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = -1
Query: 988 PPPPXEXXXRXXGXXTPPPPP 926
PPPP G PPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782
Score = 26.6 bits (56), Expect = 5.4
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = -1
Query: 988 PPPPXEXXXRXXGXXTPPPPPXGGXGXPXXPP 893
PPPP P PPP G P PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.1 bits (67), Expect = 0.25
Identities = 27/93 (29%), Positives = 29/93 (31%), Gaps = 2/93 (2%)
Frame = +3
Query: 651 PPGSXPXWXXPSXQGXPSSRFFXLXGPPPPXXXVXXNPPPXXXGGGPTPXPXXL*VPXGX 830
PP S P Q P S + PP P + P G VP
Sbjct: 365 PPRSAPS---TGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPT-- 419
Query: 831 XPXRAPPXAXP--PPXXPPXFFFGGXXGXPXPP 923
P PP A P PP PP G P PP
Sbjct: 420 -PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.1 bits (62), Expect = 1.0
Identities = 18/49 (36%), Positives = 19/49 (38%)
Frame = +3
Query: 735 PPXXXVXXNPPPXXXGGGPTPXPXXL*VPXGXXPXRAPPXAXPPPXXPP 881
PP PP PTP P + VP P APP PP PP
Sbjct: 1690 PPVRPQSAAPPQM---SAPTPPPPPMSVPP---PPSAPPMPAGPPSAPP 1732
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/38 (34%), Positives = 15/38 (39%)
Frame = +3
Query: 765 PPXXXGGGPTPXPXXL*VPXGXXPXRAPPXAXPPPXXP 878
PP P P P + P P A P + PPP P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 29.1 bits (62), Expect = 1.0
Identities = 22/80 (27%), Positives = 24/80 (30%), Gaps = 3/80 (3%)
Frame = +3
Query: 651 PPGSXPXWXXPSXQGXPSSRFFXLXGPPPPXXX---VXXNPPPXXXGGGPTPXPXXL*VP 821
PP P PS PPPP N P G P +P
Sbjct: 168 PPSFQPPSAAAPATSLPSDYNPPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPE---IP 224
Query: 822 XGXXPXRAPPXAXPPPXXPP 881
P +A P PPP PP
Sbjct: 225 PTYTPKQADPLPAPPPPPPP 244
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.8 bits (54), Expect = 9.4
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +3
Query: 846 PPXAXPPPXXPPXFFFGGXXGXPXPP 923
PP PPP PP F P PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.8 bits (54), Expect = 9.4
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Frame = +3
Query: 795 PXPXXL*VPXGXXPXRAPPXAXPPPXXPP-XFFFGGXXGXPXP 920
P P + +P P AP A PP P G G P P
Sbjct: 1883 PPPPPMALPKAGPPSAAPTSALPPAGPPAGATAISGNPGMPAP 1925
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,051,847
Number of Sequences: 5004
Number of extensions: 30629
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 509282430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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