Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_M04
(892 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ... 113 6e-24
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ... 64 3e-09
UniRef50_UPI00015C640B Cluster: hypothetical protein CKO_pCKO2p0... 60 6e-08
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ... 59 2e-07
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE... 58 3e-07
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi... 57 5e-07
UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1; ... 51 5e-05
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h... 44 0.004
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru... 43 0.009
UniRef50_UPI00015C63F8 Cluster: hypothetical protein CKO_pCKO3p0... 42 0.016
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma... 41 0.037
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob... 40 0.085
UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1; ... 39 0.20
UniRef50_A4WT25 Cluster: Flagellar hook-length control protein; ... 36 1.4
UniRef50_P03845 Cluster: Putative uncharacterized protein 1; n=4... 35 3.2
UniRef50_Q4IUS8 Cluster: Putative uncharacterized protein; n=1; ... 34 5.6
UniRef50_Q12GC2 Cluster: Putative uncharacterized protein precur... 34 5.6
>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
root|Rep: Putative uncharacterized protein - Salmonella
typhimurium
Length = 127
Score = 113 bits (272), Expect = 6e-24
Identities = 60/104 (57%), Positives = 65/104 (62%)
Frame = +2
Query: 488 SKRPGTVKRPRCWRFSIGSAPLYEHHKNRRSSQRWRNPTGL*RYQAFPPGKLPRALSWFR 667
SK+ T R RFSIGSAPL K + + FP + P FR
Sbjct: 2 SKKQSTGTSQRRCRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPL-EAPSCALLFR 60
Query: 668 PCRLPDTCPPFSLREAWRFLIAHAVXISVRCRSFAXAWAVCTNP 799
PCRLPDTCPPFSLREAWRFLIAHAV ISVRCRSFA +WAVCTNP
Sbjct: 61 PCRLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNP 104
>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
root|Rep: Putative uncharacterized protein - Escherichia
coli
Length = 61
Score = 64.5 bits (150), Expect = 3e-09
Identities = 30/38 (78%), Positives = 30/38 (78%)
Frame = -1
Query: 496 PFAGLLLTCSFLRYPLILWITVLPPLSELIPLAAAERP 383
P LLTCSF YPLILWITVLPPLSEL PLAA ERP
Sbjct: 19 PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERP 56
>UniRef50_UPI00015C640B Cluster: hypothetical protein
CKO_pCKO2p07168; n=1; Citrobacter koseri ATCC
BAA-895|Rep: hypothetical protein CKO_pCKO2p07168 -
Citrobacter koseri ATCC BAA-895
Length = 99
Score = 60.5 bits (140), Expect = 6e-08
Identities = 38/77 (49%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Frame = -1
Query: 799 GVRAHSPGXSERPTPN*DTYSVSYEKAPRFPKGERRTGIR*AAGSEPGERTRELXRG--- 629
GVRA+SP SERP P+ DT SVSYEKAPRFPKG++ + +G G R R G
Sbjct: 27 GVRAYSPAWSERPKPSRDTSSVSYEKAPRFPKGKKAEQV---SGKRQG-RNRRAHEGAAG 82
Query: 628 -KRLVSL*SCRVSPPLT 581
K SL PPLT
Sbjct: 83 EKSPASLSPVGFRPPLT 99
>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli
Length = 147
Score = 58.8 bits (136), Expect = 2e-07
Identities = 40/78 (51%), Positives = 44/78 (56%)
Frame = +2
Query: 320 RGEAVCVLGALPLPRSLTRCARSFGCGERYQLTQRR*YGYPQNQGITQERTCEQKASKRP 499
R +C G +PLPRSLTR ARSFGCGERY+LT G E T + SK
Sbjct: 26 RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT--------DGDGNFLEDT-RKTLSKEE 76
Query: 500 GTVKRPRCWRFSIGSAPL 553
RPR RFSIGSAPL
Sbjct: 77 ---IRPRRSRFSIGSAPL 91
Score = 53.6 bits (123), Expect = 6e-06
Identities = 27/48 (56%), Positives = 33/48 (68%), Gaps = 3/48 (6%)
Frame = +3
Query: 549 PCTSITKIDAQVRGGETRQDYKDTRRFPLXS---SLVRSPGSDPAAYR 683
P TSI K DAQ+ GGETRQDYKD RRFPL + +L+ P P ++R
Sbjct: 90 PLTSIAKSDAQISGGETRQDYKDPRRFPLVAPSCALLFLPFGLPVSFR 137
>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
Myxococcus xanthus
Length = 486
Score = 58.0 bits (134), Expect = 3e-07
Identities = 32/57 (56%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +2
Query: 296 CINESANARGEAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPQNQGITQ 463
CI + A AR EAV VL ALPL RS TRC RS GCG + R YG PQ QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322
>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
organisms|Rep: Predicted protein - Nematostella
vectensis
Length = 97
Score = 57.2 bits (132), Expect = 5e-07
Identities = 25/29 (86%), Positives = 26/29 (89%)
Frame = +3
Query: 549 PCTSITKIDAQVRGGETRQDYKDTRRFPL 635
P TSITK DAQ+ GGETRQDYKDTRRFPL
Sbjct: 58 PLTSITKSDAQISGGETRQDYKDTRRFPL 86
>UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 37
Score = 50.8 bits (116), Expect = 5e-05
Identities = 23/23 (100%), Positives = 23/23 (100%)
Frame = +1
Query: 661 VPTLPLTGYLSAFLPSGSVALSH 729
VPTLPLTGYLSAFLPSGSVALSH
Sbjct: 5 VPTLPLTGYLSAFLPSGSVALSH 27
>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
Alpha-hemolysin - Aeromonas hydrophila
Length = 59
Score = 44.4 bits (100), Expect = 0.004
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +1
Query: 415 HSKAVIRLSTESGDNAGKNM 474
HSKAVIRLSTESGDNAGKNM
Sbjct: 40 HSKAVIRLSTESGDNAGKNM 59
>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
(SV40)
Length = 364
Score = 43.2 bits (97), Expect = 0.009
Identities = 18/18 (100%), Positives = 18/18 (100%)
Frame = +3
Query: 96 DPDMIRYIDEFGQTTTRM 149
DPDMIRYIDEFGQTTTRM
Sbjct: 346 DPDMIRYIDEFGQTTTRM 363
>UniRef50_UPI00015C63F8 Cluster: hypothetical protein
CKO_pCKO3p06146; n=1; Citrobacter koseri ATCC
BAA-895|Rep: hypothetical protein CKO_pCKO3p06146 -
Citrobacter koseri ATCC BAA-895
Length = 125
Score = 42.3 bits (95), Expect = 0.016
Identities = 24/53 (45%), Positives = 27/53 (50%)
Frame = +2
Query: 641 LPRALSWFRPCRLPDTCPPFSLREAWRFLIAHAVXISVRCRSFAXAWAVCTNP 799
LP ALS P PPFSL + + IS RCRSFA +WAV NP
Sbjct: 42 LPLALSCSNPAVSRIPVPPFSLAGSVALSHSSHSGISARCRSFAPSWAVSKNP 94
>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
Magnoliophyta|Rep: Putative reverse transcriptase -
Zingiber officinale (Ginger)
Length = 49
Score = 41.1 bits (92), Expect = 0.037
Identities = 22/41 (53%), Positives = 25/41 (60%)
Frame = +3
Query: 222 INKLTTTIAFILCFRFRXEVWEVFXALMNRPTRGERRFAYW 344
+++LT L RF V ALMNRPTRGERRFAYW
Sbjct: 1 MSELTHINCVALTARFPVGKPVVPAALMNRPTRGERRFAYW 41
>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
Enterobacteriaceae|Rep: Lactose operon repressor -
Escherichia coli (strain K12)
Length = 360
Score = 39.9 bits (89), Expect = 0.085
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = -2
Query: 366 ERGSGRAPNTQTASPRALADSLMQ 295
+R + APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348
>UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1;
Beggiatoa sp. SS|Rep: Putative uncharacterized protein -
Beggiatoa sp. SS
Length = 114
Score = 38.7 bits (86), Expect = 0.20
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = +3
Query: 519 VAGVFP*APPPCTSITKIDAQVRGGETRQDYKDTRRFPLXS 641
++ +FP PP T+ITKI Q + +T+ +YK T FPL S
Sbjct: 65 LSSLFPYNSPPLTTITKIYPQFKNTQTQHNYKYTTPFPLQS 105
>UniRef50_A4WT25 Cluster: Flagellar hook-length control protein;
n=1; Rhodobacter sphaeroides ATCC 17025|Rep: Flagellar
hook-length control protein - Rhodobacter sphaeroides
ATCC 17025
Length = 589
Score = 35.9 bits (79), Expect = 1.4
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = +3
Query: 576 AQVRGGETRQDYKDTRRFPLXSSLVRSPGSDPAAYRIPVRLSPFGKRG 719
A V G+ DT P ++ VR PG PAA R PVR +P + G
Sbjct: 296 ASVAAGKPEDVLPDTPAMPDETAPVREPGERPAAQREPVRPAPAARSG 343
>UniRef50_P03845 Cluster: Putative uncharacterized protein 1; n=4;
Bacteria|Rep: Putative uncharacterized protein 1 -
Escherichia coli
Length = 42
Score = 34.7 bits (76), Expect = 3.2
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = -1
Query: 799 GVRAHSPGXSERPTPN 752
GVRAHSP SERPTPN
Sbjct: 27 GVRAHSPAWSERPTPN 42
>UniRef50_Q4IUS8 Cluster: Putative uncharacterized protein; n=1;
Azotobacter vinelandii AvOP|Rep: Putative uncharacterized
protein - Azotobacter vinelandii AvOP
Length = 1108
Score = 33.9 bits (74), Expect = 5.6
Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
Frame = +2
Query: 434 GYPQNQGITQERTCEQKASKRPGTVKRPRCWRFSIGSAPLYEHH--KNRRSSQRWRNPTG 607
G P ++ R C A RP ++ R R + GS P+ RR+ +R+R PT
Sbjct: 927 GEPVSRRRLARRPCGPVAGPRPRPLRPWRPGR-AAGSRPVVRERWRPGRRACRRYRRPT- 984
Query: 608 L*RYQAFPPGKLPRALSWFRPCRLPDTCPP 697
PPG P A W R C PP
Sbjct: 985 -------PPGARPGAAPWRRRCPSRRCWPP 1007
>UniRef50_Q12GC2 Cluster: Putative uncharacterized protein
precursor; n=2; Polaromonas|Rep: Putative
uncharacterized protein precursor - Polaromonas sp.
(strain JS666 / ATCC BAA-500)
Length = 268
Score = 33.9 bits (74), Expect = 5.6
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = -1
Query: 505 GSWPFAGLLLTCSFLRYP---LILWITVLPPLSELIPLAAAERP 383
G W +G L L++ LI+W+ LPPL++ IP+A+ + P
Sbjct: 158 GVWLSSGNALPWGLLQFGGMGLIVWLACLPPLADEIPMASGDSP 201
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 851,232,161
Number of Sequences: 1657284
Number of extensions: 17367409
Number of successful extensions: 42461
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 40450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42439
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 80342087756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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