Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_M04
(892 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165 31 1.6
12_01_0059 + 494876-494924,496060-496211,496344-496531,496971-49... 29 6.6
06_01_1042 + 8187536-8187616,8187713-8188315 29 6.6
06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,336... 29 6.6
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343 29 6.6
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.7
10_05_0078 + 8891364-8891529,8891535-8891797 28 8.7
04_04_1677 + 35306232-35306328,35306697-35307248,35307324-353076... 28 8.7
04_03_0484 + 16455597-16455809,16456417-16456537,16456728-164568... 28 8.7
>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
Length = 430
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -1
Query: 646 RELXRGKRLVSL*SCRVSPPLT*ASIFVMLVQGGGAYGKTPAT 518
R L RGK L+S + R PP + + V+ + GGG G P T
Sbjct: 22 RVLSRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGT 64
>12_01_0059 +
494876-494924,496060-496211,496344-496531,496971-497027,
497123-497282,497389-497457,497712-497837,497972-498091
Length = 306
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 578 SSQRWRNPTGL*RYQAFPPGKLPRALSWFRPCRLPD 685
SS+ + +P G+ + FP LP A S ++P LP+
Sbjct: 22 SSRNYVSPQGILEFYNFPIPSLPSASSNYQPSSLPE 57
>06_01_1042 + 8187536-8187616,8187713-8188315
Length = 227
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -2
Query: 756 RTEIXTA*AMRKRHASRREKGGQVSGKRQGRNQESARGSXPGGNAWY 616
RTE A + R A E+G + G R+ R + RGS G +W+
Sbjct: 63 RTERERA-PLAARPAGEEEEGRRAGGWRRRRRRRQRRGSRSLGGSWW 108
>06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,
3363820-3364098,3364189-3364386,3364475-3365110,
3365209-3365463,3365579-3365685,3365770-3369566,
3369677-3370166,3370918-3371308,3371481-3371573,
3371687-3371810,3372544-3372791
Length = 2380
Score = 28.7 bits (61), Expect = 6.6
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +1
Query: 529 FFHRLRPPVRASQKSTL-KSEVAKPDRTIKIPGVSPWXAPSCALLVPTLPLTGYLSAFLP 705
F+H P + S + + EVA+ DR W A + L PT P T L +P
Sbjct: 2319 FYHEDHRPTHFLEFSNIDEGEVAEGDRE----DTFTWFACATTLQQPTRPFTSPLYKHMP 2374
Query: 706 SGSVAL 723
+G V +
Sbjct: 2375 TGGVGV 2380
>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
Length = 356
Score = 28.7 bits (61), Expect = 6.6
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +2
Query: 353 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 508
P PRS RC GCG R Q TQR P N IT E TC ++ P +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +2
Query: 302 NESAN---ARGEAVCVLGALPLPRSLTRCAR 385
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>10_05_0078 + 8891364-8891529,8891535-8891797
Length = 142
Score = 28.3 bits (60), Expect = 8.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 643 PSCALLVPTLPLTGYLSAFLPS 708
P CA L P +P+ G L F+PS
Sbjct: 92 PPCAFLPPDVPVEGILMIFVPS 113
>04_04_1677 +
35306232-35306328,35306697-35307248,35307324-35307608,
35308035-35308296,35308378-35308430,35308520-35308587,
35310331-35310420,35310502-35310586,35310822-35311254,
35312872-35313439,35313527-35314000
Length = 988
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Frame = -2
Query: 789 HTAQAXANDLHRTEIXTA*AMRKRHASRREKGGQVSG--KRQGRNQESARGSXPGGNAW 619
H + A +H T + + R + SG KR+G S R P G W
Sbjct: 713 HDGEKTATSVHSTPALSPMGSPRHSVGRDSSSSRFSGHPKRKGDKSSSGRKGAPAGKGW 771
>04_03_0484 +
16455597-16455809,16456417-16456537,16456728-16456822,
16458633-16458747,16458868-16458992,16459354-16459460,
16459548-16459626
Length = 284
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -3
Query: 812 VGMNGGSCTQPRLERTTYTELRYXQREL*ESATLPEG 702
VG+NGG + RLE Y EL + Q L T+ G
Sbjct: 32 VGVNGGETDERRLESLVYDELPFSQLGLGFPTTVVAG 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,992,376
Number of Sequences: 37544
Number of extensions: 519886
Number of successful extensions: 1396
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1395
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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